CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nAv.1.0.1.g03797
(
Acanthocheilonema viteae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
nAv.1.0.1.g03797
T155018_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
bcl-11
M00641_2.00
Caenorhabditis elegans
NNTGACCRNN
NNYGGTCANN
PBM
Narasimhan et al.(2015)
pTH10807
0.817
0.897
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nAv.1.0.1.t03797-RA
C2H2 ZF
730
752
DRCTFCCKVFTNRSNLIVHLRSH
nAv.1.0.1.t03797-RA
C2H2 ZF
758
780
YKCRLCSYACAQSSKLTRHMRTH
nAv.1.0.1.t03797-RA
C2H2 ZF
788
809
YHCNICQMPFSVHSTLEKHMRK
Links
Other
C2H2 ZF
family TFs
Other
Acanthocheilonema viteae
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy