CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SMUV_0000156601
(
Syphacia muris
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SMUV_0000156601
T156418_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
C55C2.1_CONSTRUCT
M00649_2.00
PBM CONSTRUCTS
NHYDHHNNN
NNNDDHRDN
PBM
Narasimhan et al.(2015)
pTH10623
0.761
0.809
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SMUV_0000156601-mRNA-1
C2H2 ZF
165
187
CQCQICGKTFSRHWLLQGHIRTH
SMUV_0000156601-mRNA-1
C2H2 ZF
193
215
FVCHICSKAFADKSNLRAHVQTH
SMUV_0000156601-mRNA-1
C2H2 ZF
221
242
FGCSRCGKKFALKSYLSKHEES
Links
Other
C2H2 ZF
family TFs
Other
Syphacia muris
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy