CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SROB_0001927701
(
Schistosoma rodhaini
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
SROB_0001927701
T156969_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
egrh-1
M00622_2.00
Caenorhabditis elegans
CSCCCMCR
YGKGGGSG
PBM
Narasimhan et al.(2015)
pTH9317
0.780
0.768
sr
M06072_2.00
Drosophila melanogaster
HVMCGCCCMCVYMH
DKRBGKGGGCGKBD
B1H
Zhu et al.(2011)
sr_SANGER_5_FBgn0003499
0.764
0.739
sr
M06073_2.00
Drosophila melanogaster
NNMCRCCCMCVHNN
NNDBGKGGGYGKNN
B1H
Zhu et al.(2011)
sr_SOLEXA_5_FBgn0003499
0.764
0.739
Egr1
M01864_2.00
Mus musculus
CCCMCGYNN
NNRCGKGGG
PBM
Weirauch et al.(2014)
pTH5337
0.761
0.768
Egr1
M00375_2.00
Mus musculus
NCCYMCDNN
NNHGKRGGN
PBM
Berger et al.(2006)
Zif268
0.761
0.768
EGR1
M02883_2.00
Homo sapiens
NMCGCCCMCGCANN
NNTGCGKGGGCGKN
SELEX
Jolma et al.(2013)
EGR1_1
0.761
0.768
EGR1
M02884_2.00
Homo sapiens
HMCGCCCACGCAHW
WDTGCGTGGGCGKD
SELEX
Jolma et al.(2013)
EGR1_2
0.761
0.768
Egr1
M02932_2.00
Mus musculus
HHMCGCCCMCBCAHHH
DDDTGVGKGGGCGKDD
SELEX
Jolma et al.(2013)
Egr1_1
0.761
0.768
EGR1
M04437_2.00
Homo sapiens
NNCRCCCMCRCNN
NNGYGKGGGYGNN
SELEX
Yin et al.(2017)
EGR1_eDBD_HT-SELEX
0.761
0.768
Egr1
M05860_2.00
Mus musculus
NNMCRCCCMCGCN
NGCGKGGGYGKNN
SMiLE-seq
Isakova et al.(2017)
EGR1
0.761
0.768
EGR1
M07927_2.00
Homo sapiens
NVBNNNNBCCGCCCMCGCNB
VNGCGKGGGCGGVNNNNVBN
ChIP-seq
Gerstein et al.(2012)
GM12878_EGR1_HudsonAlpha
0.761
0.768
EGR1
M07928_2.00
Homo sapiens
BNCCGCCCMCGCNBB
VVNGCGKGGGCGGNV
ChIP-seq
Gerstein et al.(2012)
H1-hESC_EGR1_HudsonAlpha
0.761
0.768
EGR1
M07929_2.00
Homo sapiens
NNNNNNBNNCCRCCCMCGCN
NGCGKGGGYGGNNVNNNNNN
ChIP-seq
Gerstein et al.(2012)
K562_EGR1_HudsonAlpha
0.761
0.768
EGR1
M08882_2.00
Homo sapiens
BHNCCDCCCMCDCHBNB
VNVDGHGKGGGHGGNDV
Misc
Kulakovskiy et al.(2013)
EGR1_HUMAN.H11MO.0.A
0.761
0.768
Egr1
M08996_2.00
Mus musculus
YYCCRCCCMCGCNB
VNGCGKGGGYGGRR
Misc
Kulakovskiy et al.(2013)
EGR1_MOUSE.H11MO.0.A
0.761
0.768
EGR1
M09506_2.00
Homo sapiens
CRCCCMCRCA
TGYGKGGGYG
Misc
Heinz et al.(2010)
K562-Egr1_GSE32465
0.761
0.768
EGR1
M10188_2.00
Homo sapiens
MCGCCYACGCAW
WTGCGTRGGCGK
Transfac
Matys et al.(2006)
V$EGR1_01
0.761
0.768
EGR1
M10189_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_02
0.761
0.768
EGR1
M10190_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_09
0.761
0.768
EGR1
M10191_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_11
0.761
0.768
EGR1
M10192_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_12
0.761
0.768
EGR1
M10193_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_13
0.761
0.768
EGR1
M10194_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_15
0.761
0.768
EGR1
M10195_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_Q3
0.761
0.768
EGR1
M10196_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EGR1_Q6
0.761
0.768
EGR1
M04438_2.00
Homo sapiens
NHCDCCCMCNYNN
NNRNGKGGGHGDN
SELEX
Yin et al.(2017)
EGR1_eDBD_Methyl-HT-SELEX
0.761
0.768
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SROB_0001927701-mRNA-1
C2H2 ZF
380
402
HKCTSCNKCFSRSDELTRHARIH
SROB_0001927701-mRNA-1
C2H2 ZF
408
430
FKCAECQREFSRSDHLTTHMRTH
SROB_0001927701-mRNA-1
C2H2 ZF
436
458
FVCDICGRSFARSDERKRHTKVH
Links
Other
C2H2 ZF
family TFs
Other
Schistosoma rodhaini
TFs
182 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy