CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nLs.2.1.2.g09672
(
Litomosoides sigmodontis
)
C2HC ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01530 (zf-C2HC)
IPR002515
nLs.2.1.2.g09672
T159658_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ztf-11
M00650_2.00
Caenorhabditis elegans
VAAGTTTN
NAAACTTB
PBM
Narasimhan et al.(2015)
pTH9925
0.930
0.930
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
nLs.2.1.2.t09672-RA
C2HC ZF
89
116
TCPTPGCDGSGHQTGLYTHHRSLSGCPR
nLs.2.1.2.t09672-RA
C2HC ZF
135
163
RCTTPGCTGKGHVNSNRTSHRSLSGCPIA
Links
Other
C2HC ZF
family TFs
Other
Litomosoides sigmodontis
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy