LIN28B (Equus caballus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSECAG00000020994 T164532_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.985 0.985
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.985 0.985
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000018401 CSD 28 100

Links

Other CSD family TFs
Other Equus caballus TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Moror_1996 Moniliophthora roreri Moror_1996 I 0.000
HYDPIDRAFT_41913 Hydnomerulius pinastri HYDPIDRAFT_41913 I 0.000
JAAARDRAFT_499496 Jaapia argillacea JAAARDRAFT_499496 I 0.000
M378DRAFT_15741 Amanita muscaria M378DRAFT_15741 I 0.000
M404DRAFT_850536 Pisolithus tinctorius M404DRAFT_850536 I 0.000
M408DRAFT_287766 Serendipita vermifera M408DRAFT_287766 I 0.000
PILCRDRAFT_269563 Piloderma croceum PILCRDRAFT_269563 I 0.000
NAPIS_ORF02165 Nosema apis NAPIS_ORF02165 I 0.000
PIIN_02959 Piriformospora indica PIIN_02959 I 0.000
NCER_100403 Nosema ceranae NCER_100403 I 0.000
PLEOSDRAFT_163788 Pleurotus ostreatus PLEOSDRAFT_163788 I 0.000
GLOTRDRAFT_139953 Gloeophyllum trabeum GLOTRDRAFT_139953 I 0.000
PLICRDRAFT_179242 Plicaturopsis crispa PLICRDRAFT_179242 I 0.000
AGABI2DRAFT_122355 Agaricus bisporus AGABI2DRAFT_122355 I 0.000
CC1G_07949 Coprinopsis cinerea CC1G_07949 I 0.000
CERSUDRAFT_124570 Ceriporiopsis subvermispora CERSUDRAFT_124570 I 0.000
DI09_14p30 Microsporidia sp DI09_14p30 I 0.000
SLOPH_445 Spraguea lophii SLOPH_445 I 0.000
SERLA73DRAFT_161532 Serpula lacrymans SERLA73DRAFT_161532 I 0.000
SCHCODRAFT_235408 Schizophyllum commune SCHCODRAFT_235408 I 0.000
PAXRUDRAFT_24474 Paxillus rubicundulus PAXRUDRAFT_24474 I 0.000
THOM_1128 Trachipleistophora hominis THOM_1128 N 0.000
VCUG_01510 Vavraia culicis VCUG_01510 N 0.000
PGTG_08516 Puccinia graminis PGTG_08516 N 0.000
NERG_02091 Nematocida sp NERG_02091 N 0.000
AMAG_01902 Allomyces macrogynus AMAG_01902 N 0.000
CAD25410 Encephalitozoon cuniculi CAD25410 N 0.000
E5Q_05501 Mixia osmundae E5Q_05501 N 0.000
EDEG_00614 Edhazardia aedis EDEG_00614 N 0.000
EHEL_060450 Encephalitozoon hellem EHEL_060450 N 0.000
EROM_060430 Encephalitozoon romaleae EROM_060430 N 0.000
H311_02385 Anncaliia algerae H311_02385 N 0.000
AMAG_00381 Allomyces macrogynus AMAG_00381 N 0.000
NBO_278g0001 Nosema bombycis NBO_278g0001 N 0.000
NEPG_01938 Nematocida parisii ertm1 NEPG_01938 N 0.000
VICG_01188 Vittaforma corneae VICG_01188 N 0.000