Cmyd_10006225 (Chelonia mydas)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Cmyd_10006225 T165301_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.816 0.816
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10006225 CSD 29 73

Links

Other CSD family TFs
Other Chelonia mydas TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.968
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.816
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.800
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.789
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.789
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.789
LIN28B Equus caballus ENSECAG00000020994 I 0.789
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.789
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.763
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.763
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.750
LIN28B Gallus gallus ENSGALG00000026761 I 0.737
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.711
Aan_R002277 Calypte anna Aan_R002277 I 0.711