Ocbimv22031643m.g (Octopus bimaculoides)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09271 (LAG1-DNAbind) IPR015351 Ocbimv22031643m.g T166334_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RBPJ
M00735_2.00
Homo sapiens
NNNBTCHCAN

NTGDGAVNNN
PBM
DelBianco et al.(2010)
GST-CSL_Fig2
0.855 0.855
RBPJ
M00736_2.00
Homo sapiens
NNNYTCHCAN

NTGDGARNNN
PBM
DelBianco et al.(2010)
GST-CSL_Fig4
0.855 0.855
RBPJ
M00737_2.00
Homo sapiens
NNNBTCHCAN

NTGDGAVNNN
PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1
0.855 0.855
RBPJ
M00738_2.00
Homo sapiens
NBTCHCAN

NTGDGAVN
PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1
0.855 0.855
RBPJ
M00739_2.00
Homo sapiens
NNBTCHCAN

NTGDGAVNN
PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His
0.855 0.855
RBPJ
M00740_2.00
Homo sapiens
NNNYTCYCAN

NTGRGARNNN
PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2
0.855 0.855
RBPJ
M00741_2.00
Homo sapiens
NNNBTCHCAN

NTGDGAVNNN
PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2
0.855 0.855
RBPJ
M00742_2.00
Homo sapiens
NDYTCHCAB

VTGDGARHN
PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5
0.855 0.855
RBPJ
M08105_2.00
Homo sapiens
NNTTCCCABN

NVTGGGAANN
ChIP-seq
Mathelier et al.(2014)
MA1116.1
0.855 0.855
RBPJ
M09020_2.00
Homo sapiens
BTTCCCASVVN

NBBSTGGGAAV
Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A
0.855 0.855
Rbpj
M09021_2.00
Mus musculus
NBTTCCCASVV

BBSTGGGAAVN
Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A
0.855 0.855
RBPJ
M10413_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RBPJK_01
0.855 0.855
RBPJ
M10414_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RBPJK_Q4
0.855 0.855
Su(H)
M10415_2.00
Drosophila melanogaster
VGKTTCYCACRVY

RBYGTGRGAAMCB
Transfac
Matys et al.(2006)
I$SUH_01
0.794 0.794
Su(H)
M08455_2.00
Drosophila melanogaster
HBHNVGKTTCYCACRV

BYGTGRGAAMCBNDVD
COMPILED
Mathelier et al.(2014)
MA0085.1
0.794 0.794
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22031643m.p CSL 262 392
Ocbimv22031644m.p CSL 249 379
Ocbimv22031645m.p CSL 234 364
Ocbimv22031646m.p CSL 221 351
Ocbimv22031647m.p CSL 93 223
Ocbimv22031648m.p CSL 106 236
Ocbimv22031649m.p CSL 148 278

Links

Other CSL family TFs
Other Octopus bimaculoides TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TIGD2 Monodelphis domestica ENSMODG00000019223 D 0.000
JRKL Ochotona princeps ENSOPRG00000010096 I 0.000
TIGD2 Otolemur garnettii ENSOGAG00000032052 I 0.000
ENSOGAG00000029206 Otolemur garnettii ENSOGAG00000029206 I 0.000
ENSOARG00000008312 Ovis aries ENSOARG00000008312 I 0.000
ENSOARG00000000411 Ovis aries ENSOARG00000000411 I 0.000
JRKL Ornithorhynchus anatinus ENSOANG00000014711 I 0.000
Jrkl Mus musculus ENSMUSG00000079083 I 0.000
Tigd2 Mus musculus ENSMUSG00000049232 I 0.000
ENSMPUG00000019104 Mustela putorius furo ENSMPUG00000019104 I 0.000
ENSMPUG00000012306 Mustela putorius furo ENSMPUG00000012306 I 0.000
ENSPANG00000003755 Papio anubis ENSPANG00000003755 I 0.000
ENSPANG00000017875 Papio anubis ENSPANG00000017875 I 0.000
ENSPPYG00000003796 Pongo abelii ENSPPYG00000003796 I 0.000
ENSP00000389989-D1 Bos grunniens ENSP00000389989-D1 I 0.000
ENSP00000317170 Macaca fascicularis ENSP00000317170 I 0.000
ENSP00000317170-D1 Bos grunniens ENSP00000317170-D1 I 0.000
JRKL Vicugna pacos ENSVPAG00000008344 I 0.000
ENSSTOG00000028053 Ictidomys tridecemlineatus ENSSTOG00000028053 I 0.000
ENSSTOG00000026474 Ictidomys tridecemlineatus ENSSTOG00000026474 I 0.000
ENSSHAG00000004352 Sarcophilus harrisii ENSSHAG00000004352 I 0.000
Jrkl Rattus norvegicus ENSRNOG00000047133 I 0.000
Tigd2 Rattus norvegicus ENSRNOG00000038449 I 0.000
ENSPPYG00000014930 Pongo abelii ENSPPYG00000014930 I 0.000
ENSP00000389989 Macaca fascicularis ENSP00000389989 I 0.000
JRKL Monodelphis domestica ENSMODG00000024414 I 0.000
ENSMMUG00000006958 Macaca mulatta ENSMMUG00000006958 I 0.000
JRKL Felis catus ENSFCAG00000007462 I 0.000
JRKL Erinaceus europaeus ENSEEUG00000014957 I 0.000
ENSCSAG00000000606 Chlorocebus sabaeus ENSCSAG00000000606 I 0.000
ENSCSAG00000000410 Chlorocebus sabaeus ENSCSAG00000000410 I 0.000
ENSCPOG00000013612 Cavia porcellus ENSCPOG00000013612 I 0.000
TIGD2 Canis familiaris ENSCAFG00000009844 I 0.000
JRKL Canis familiaris ENSCAFG00000004081 I 0.000
JRKL Bos taurus ENSBTAG00000037488 I 0.000
TIGD2 Bos taurus ENSBTAG00000015265 I 0.000
ENSAMEG00000020055 Ailuropoda melanoleuca ENSAMEG00000020055 I 0.000
TIGD2 Homo sapiens ENSG00000180346 I 0.000
JRKL Homo sapiens ENSG00000183340 I 0.000
JRKL Macaca mulatta ENSMMUG00000003821 I 0.000
JRKL Myotis lucifugus ENSMLUG00000025663 I 0.000
ENSMICG00000009416 Microcebus murinus ENSMICG00000009416 I 0.000
JRKL Loxodonta africana ENSLAFG00000032743 I 0.000
ENSLACG00000010942 Latimeria chalumnae ENSLACG00000010942 I 0.000
ENSLACG00000008134 Latimeria chalumnae ENSLACG00000008134 I 0.000
ENSLACG00000006290 Latimeria chalumnae ENSLACG00000006290 I 0.000
ENSLACG00000003439 Latimeria chalumnae ENSLACG00000003439 I 0.000
TIGD2 Gorilla gorilla ENSGGOG00000026736 I 0.000
JRKL Gorilla gorilla ENSGGOG00000000360 I 0.000
ENSAMEG00000007961 Ailuropoda melanoleuca ENSAMEG00000007961 I 0.000