CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GATA24
(
Arabidopsis thaliana
)
Dof
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02701 (zf-Dof)
IPR003851
AT3G21175
T170163_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN
NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
(Direct)
(Direct)
GATA24
M06845_2.00
Arabidopsis thaliana
TCATCATCATCATCA
TGATGATGATGATGA
Dap-seq
OMalley et al.(2016)
ZML1_col_a
(Direct)
(Direct)
GATA24
M06846_2.00
Arabidopsis thaliana
DNNAATCTBRRCCGTYSRWTY
RAWYSRACGGYYVAGATTNNH
Dap-seq
OMalley et al.(2016)
ZML1_colamp_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN
NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.857
0.861
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN
NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.847
0.861
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.847
0.861
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.810
0.833
For this family, TFs with SR scores >
0.508
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01941_2.00
GATA
51
88
CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTL
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G21175.1
Dof
232
270
MRRGPDGPRTLCNACGLMWANKGTLRDLSKVPPPQTPQH
AT3G21175.2
GATA
217
254
CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTL
Links
Other
Dof
family TFs
Other
Arabidopsis thaliana
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy