Ciclev10020979m.g (Citrus clementina)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Ciclev10020979m.g T173917_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.787 0.787
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.787 0.787
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.787 0.787
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.618 0.618
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.618 0.618
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.618 0.618
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.618 0.618
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.562 0.562
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.562 0.562
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.562 0.562
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.562 0.562
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.562 0.562
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.562 0.562
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.539 0.539
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.539 0.539
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.539 0.539
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10020979m E2F 25 43
Ciclev10020979m E2F 114 193

Links

Other E2F family TFs
Other Citrus clementina TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g042344m.g Citrus sinensis orange1.1g042344m.g N 0.787
Cagra.1390s0037 Capsella grandiflora Cagra.1390s0037 I 0.670
Bostr.18473s0137 Boechera stricta Bostr.18473s0137 I 0.640
Lus10005840.g Linum usitatissimum Lus10005840.g N 0.629
OB06G18550 Oryza brachyantha OB06G18550 I 0.618
Traes_7DS_791693792 Triticum aestivum Traes_7DS_791693792 I 0.607
Traes_7AS_D5F5D49CA Triticum aestivum Traes_7AS_D5F5D49CA I 0.607
Traes_6AL_DD0E18465 Triticum aestivum Traes_6AL_DD0E18465 I 0.607
TCM_011971 Theobroma cacao TCM_011971 I 0.600
Pavir.Aa00738 Panicum virgatum Pavir.Aa00738 I 0.596
OMERI06G10800 Oryza meridionalis OMERI06G10800 I 0.596
PDK_20s1507381g001 Phoenix dactylifera PDK_20s1507381g001 N 0.562
GLYMA05G01760 Glycine max GLYMA05G01760 I 0.559
GLYMA17G10130 Glycine max GLYMA17G10130 I 0.559
mgf025923m Mimulus guttatus mgf025923m N 0.551
mg017600m Mimulus guttatus mg017600m N 0.551
Gorai.004G114000 Gossypium raimondii Gorai.004G114000 I 0.551
chr4.LjT30K03.50.nc Lotus japonicus chr4.LjT30K03.50.nc I 0.544
Bra018080 Brassica rapa Bra018080 I 0.544
PK09429.1 Cannabis sativa PK09429.1 N 0.539
evm.TU.supercontig_35.34 Carica papaya evm.TU.supercontig_35.34 I 0.537
Bo8g076700 Brassica oleracea Bo8g076700 I 0.537
Thhalv10010430m.g Eutrema salsugineum Thhalv10010430m.g I 0.537
PK00080.1 Cannabis sativa PK00080.1 I 0.529
POPTR_0015s08160 Populus trichocarpa POPTR_0015s08160 I 0.529
Ca_15301 Cicer arietinum Ca_15301 I 0.529
Cucsa.098190 Cucumis sativus Cucsa.098190 I 0.529
Bra033767 Brassica rapa Bra033767 I 0.529
Bo1g074680 Brassica oleracea Bo1g074680 I 0.529
Carubv10018365m.g Capsella rubella Carubv10018365m.g I 0.522
GLYMA06G19843 Glycine max GLYMA06G19843 I 0.522
DEL1 Arabidopsis lyrata fgenesh2_kg.5__1169__AT3G48160.2 I 0.522
SapurV1A.0161s0320 Salix purpurea SapurV1A.0161s0320 I 0.522
30147.m014015 Ricinus communis 30147.m014015 I 0.522
MTR_4g106540 Medicago truncatula MTR_4g106540 I 0.522
cassava17583.valid.m1 Manihot esculenta cassava17583.valid.m1 I 0.522
SapurV1A.1521s0010 Salix purpurea SapurV1A.1521s0010 I 0.522
Cagra.4239s0004 Capsella grandiflora Cagra.4239s0004 I 0.522
Pavir.Da01202 Panicum virgatum Pavir.Da01202 I 0.520
MDP0000311683 Malus domestica MDP0000311683 I 0.517
E2FD Arabidopsis thaliana AT5G14960 D 0.517
MDP0000258338 Malus domestica MDP0000258338 I 0.517
POPTR_0012s07700 Populus trichocarpa POPTR_0012s07700 I 0.515
GLYMA04G34870 Glycine max GLYMA04G34870 I 0.515
E2FE Arabidopsis thaliana AT3G48160 D 0.515
PGSC0003DMG402024469 Solanum tuberosum PGSC0003DMG402024469 I 0.511
chr1.CM1956.640.nc Lotus japonicus chr1.CM1956.640.nc I 0.507
PRUPE_ppa015063mg Prunus persica PRUPE_ppa015063mg I 0.507
gene03312-v1.0-hybrid Fragaria vesca gene03312-v1.0-hybrid I 0.507
Pm024664 Prunus mume Pm024664 I 0.507
DEL1 Vitis vinifera VIT_17s0000g07630 I 0.507
OLONG_012839 Oryza longistaminata OLONG_012839 I 0.504
Eucgr.K02883 Eucalyptus grandis Eucgr.K02883 I 0.500
cassava23001.valid.m1 Manihot esculenta cassava23001.valid.m1 I 0.500
BGIOSGA022619 Oryza indica BGIOSGA022619 I 0.496
Solyc03g113760.2 Solanum lycopersicum Solyc03g113760.2 I 0.493
GRMZM2G060000 Zea mays GRMZM2G060000 I 0.493
cassava22158.valid.m1 Manihot esculenta cassava22158.valid.m1 I 0.493
Lus10042941.g Linum usitatissimum Lus10042941.g I 0.493
Sb10g008800 Sorghum bicolor Sb10g008800 I 0.493
TRIUR3_05632 Triticum urartu TRIUR3_05632 I 0.492
Lus10039455.g Linum usitatissimum Lus10039455.g I 0.488
TRIUR3_19744 Triticum urartu TRIUR3_19744 I 0.485
BRADI1G44520 Brachypodium distachyon BRADI1G44520 I 0.485
Eucgr.I01881 Eucalyptus grandis Eucgr.I01881 I 0.485
Lus10032439.g Linum usitatissimum Lus10032439.g I 0.485
F775_15908 Aegilops tauschii F775_15908 I 0.478
Ciclev10018041m.g Citrus clementina Ciclev10018041m.g I 0.478
Pavir.Db01700 Panicum virgatum Pavir.Db01700 I 0.478
Si006412m.g Setaria italica Si006412m.g I 0.478
Sb04g028440 Sorghum bicolor Sb04g028440 I 0.478
MLOC_67050 Hordeum vulgare MLOC_67050 I 0.478
GRMZM2G361659 Zea mays GRMZM2G361659 I 0.478
Traes_7BS_CCA195724 Triticum aestivum Traes_7BS_CCA195724 I 0.478
GRMZM2G378665 Zea mays GRMZM2G378665 I 0.478
Aquca_025_00187 Aquilegia coerulea Aquca_025_00187 I 0.478
Traes_6DL_90C72AE92 Triticum aestivum Traes_6DL_90C72AE92 I 0.474
ORGLA06G0087600 Oryza glaberrima ORGLA06G0087600 I 0.471
MDP0000734535 Malus domestica MDP0000734535 I 0.471
OGLUM06G09840 Oryza glumaepatula OGLUM06G09840 I 0.471
OBART06G09260 Oryza barthii OBART06G09260 I 0.471
GSMUA_Achr7G02220_001 Musa acuminata GSMUA_Achr7G02220_001 I 0.471
ONIVA06G10700 Oryza nivara ONIVA06G10700 I 0.471
OPUNC06G08860 Oryza punctata OPUNC06G08860 I 0.471
VIT_14s0066g02370 Vitis vinifera VIT_14s0066g02370 I 0.471
Si019635m.g Setaria italica Si019635m.g I 0.471
OS06G0245900 Oryza sativa OS06G0245900 I 0.471
ORUFI06G09470 Oryza rufipogon ORUFI06G09470 I 0.471
BRADI3G59740 Brachypodium distachyon BRADI3G59740 I 0.466
Cucsa.197250 Cucumis sativus Cucsa.197250 I 0.466
TCM_017926 Theobroma cacao TCM_017926 I 0.463
F775_06335 Aegilops tauschii F775_06335 I 0.463
LPERR06G08240 Leersia perrieri LPERR06G08240 I 0.463
OB02G38920 Oryza brachyantha OB02G38920 I 0.463
Gorai.006G027400 Gossypium raimondii Gorai.006G027400 I 0.456
mgf007657m Mimulus guttatus mgf007657m I 0.456
Cla008447 Citrullus lanatus Cla008447 I 0.455
gene09494-v1.0-hybrid Fragaria vesca gene09494-v1.0-hybrid I 0.451
OBART02G31930 Oryza barthii OBART02G31930 I 0.449
OLONG_014374 Oryza longistaminata OLONG_014374 I 0.449
OMERI02G30620 Oryza meridionalis OMERI02G30620 I 0.449
BGIOSGA005653 Oryza indica BGIOSGA005653 I 0.449
Bo2g012280 Brassica oleracea Bo2g012280 I 0.449
Carubv10014041m.g Capsella rubella Carubv10014041m.g I 0.449
Thhalv10013977m.g Eutrema salsugineum Thhalv10013977m.g I 0.449
LPERR02G26130 Leersia perrieri LPERR02G26130 I 0.449
ONIVA06G05110 Oryza nivara ONIVA06G05110 I 0.449
OS02G0739700 Oryza sativa OS02G0739700 I 0.449
OPUNC02G29630 Oryza punctata OPUNC02G29630 I 0.449
Bostr.2902s0230 Boechera stricta Bostr.2902s0230 I 0.449
ORUFI02G33610 Oryza rufipogon ORUFI02G33610 I 0.449
ORGLA02G0274600 Oryza glaberrima ORGLA02G0274600 I 0.449
OGLUM02G32560 Oryza glumaepatula OGLUM02G32560 I 0.445
PDK_20s1335201g002 Phoenix dactylifera PDK_20s1335201g002 I 0.441
Bra023497 Brassica rapa Bra023497 I 0.441
Bostr.1460s0076 Boechera stricta Bostr.1460s0076 I 0.441
E2FF Arabidopsis thaliana AT3G01330 I 0.441
PGSC0003DMG400001296 Solanum tuberosum PGSC0003DMG400001296 I 0.438
Carubv10001291m.g Capsella rubella Carubv10001291m.g I 0.434
Cagra.1036s0060 Capsella grandiflora Cagra.1036s0060 I 0.434
GSMUA_Achr10G29600_001 Musa acuminata GSMUA_Achr10G29600_001 I 0.434
Thhalv10021032m.g Eutrema salsugineum Thhalv10021032m.g I 0.434