Cmyd_10009831 (Chelonia mydas)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Cmyd_10009831 T174805_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Ebf1
M09045_2.00
Mus musculus
DBYCCCWRGGGAV

BTCCCYWGGGRVH
Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A
0.853 0.853
Ebf1
M09527_2.00
Mus musculus
DBTCCCHDGGGA

TCCCHDGGGAVH
Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978
0.853 0.853
Ebf1
M10469_2.00
Mus musculus
VYMHVYYCYYBRGGGAVTHKHB

VDMDABTCCCYVRRGRRBDKRB
Transfac
Matys et al.(2006)
V$OLF1_01
0.853 0.853
EBF3
M10461_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF_Q6
0.779 0.779
EBF4
M10460_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EBF4_02
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10009831 EBF1 3 97

Links

Other EBF1 family TFs
Other Chelonia mydas TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
EBF4 Homo sapiens ENSG00000088881 D 0.705
EBF3 Homo sapiens ENSG00000108001 D 0.779
Ogr13832 Ophisaurus gracilis Ogr13832 I 0.768
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I 0.726
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I 0.716
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.705
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I 0.832
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.768
EBF4 Oryzias latipes ENSORLG00000020414 I 0.705
EBF1 Oryzias latipes ENSORLG00000007471 I 0.832
ebf3a Oryzias latipes ENSORLG00000005870 I 0.716
EBF1 Oryzias latipes ENSORLG00000002342 I 0.726
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I 0.832
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I 0.726
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I 0.716
EBF3 Otolemur garnettii ENSOGAG00000007572 I 0.779
EBF4 Oryctolagus cuniculus ENSOCUG00000023917 I 0.716
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I 0.705
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.832
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I 0.779
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I 0.716
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.705
EBF3 Tursiops truncatus ENSTTRG00000014010 I 0.768
EBF1 Tursiops truncatus ENSTTRG00000009929 I 0.853
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.705
EBF1 Takifugu rubripes ENSTRUG00000009320 I 0.821
ENSTNIG00000017063 Tetraodon nigroviridis ENSTNIG00000017063 I 0.832
EBF3 Taeniopygia guttata ENSTGUG00000011600 I 0.779
EBF1 Taeniopygia guttata ENSTGUG00000000593 I 0.853
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.747
Ebf1 Rattus norvegicus ENSRNOG00000028845 I 0.764
Ebf3 Rattus norvegicus ENSRNOG00000016102 I 0.779
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I 0.779
EBF3 Ornithorhynchus anatinus ENSOANG00000012326 I 0.779
ENSNLEG00000004218 Nomascus leucogenys ENSNLEG00000004218 I 0.853
Ebf3 Mus musculus ENSMUSG00000010476 I 0.779
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I 0.779
EBF3 Echinops telfairi ENSETEG00000014060 I 0.779
EBF1 Equus caballus ENSECAG00000007964 I 0.853
ebf1a Danio rerio ENSDARG00000099849 I 0.853
si:ch211-51e8.2 Danio rerio ENSDARG00000092635 I 0.832
ebf1b Danio rerio ENSDARG00000069196 I 0.832
EBF1 Canis familiaris ENSCAFG00000017318 I 0.853
EBF4 Canis familiaris ENSCAFG00000006631 I 0.705
EBF4 Bos taurus ENSBTAG00000037757 I 0.705
ENSAMXG00000012646 Astyanax mexicanus ENSAMXG00000012646 I 0.821
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.747
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I 0.705
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I 0.853
ENSACAG00000003052 Anolis carolinensis ENSACAG00000003052 I 0.716
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.705
EBF1 Gorilla gorilla ENSGGOG00000000033 I 0.853
ENSMPUG00000013409 Mustela putorius furo ENSMPUG00000013409 I 0.853
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I 0.705
ENSMODG00000016695 Monodelphis domestica ENSMODG00000016695 I 0.779
EBF3 Macaca mulatta ENSMMUG00000011447 I 0.779
ENSMLUG00000025817 Myotis lucifugus ENSMLUG00000025817 I 0.747
EBF4 Myotis lucifugus ENSMLUG00000023832 I 0.705
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.768
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I 0.768
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.853
ENSLACG00000001966 Latimeria chalumnae ENSLACG00000001966 I 0.768
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I 0.705
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I 0.821
EBF4 Gorilla gorilla ENSGGOG00000015503 I 0.705
EBF1 Erinaceus europaeus ENSEEUG00000004482 N 0.842
ENSMEUG00000001579 Macropus eugenii ENSMEUG00000001579 N 0.853