estExt_gwp.C_3810003 (Branchiostoma floridae)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) estExt_gwp.C_3810003 T174840_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.814 0.814
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.814 0.814
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.814 0.814
EBF2
M10466_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_02 		0.814 0.814
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.814 0.814
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.814 0.814
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.791 0.791
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.791 0.791
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp.C_3810003 EBF1 9 51

Links

Other EBF1 family TFs
Other Branchiostoma floridae TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG000393.1 Alligator sinensis Alligator_sinensis_CCG000393.1 I 0.875
ENSPANG00000010656 Papio anubis ENSPANG00000010656 I 0.875
Pvit_12046 Pogona vitticeps Pvit_12046 I 0.875
EBF3 Dasypus novemcinctus ENSDNOG00000002588 I 0.875
Myotis_brandtii_Ebf1_10034833 Myotis brandtii Myotis_brandtii_Ebf1_10034833 I 0.875
EBF1 Equus caballus ENSECAG00000007964 I 0.875
ENSAMXG00000006585 Astyanax mexicanus ENSAMXG00000006585 I 0.837
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.837
BTMF_0000130101 Brugia timori BTMF_0000130101 I 0.826
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I 0.814
ENSPSIG00000005604 Pelodiscus sinensis ENSPSIG00000005604 I 0.814
ENSPMAG00000004238 Petromyzon marinus ENSPMAG00000004238 I 0.814
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I 0.814
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 0.814
EBF2 Pteropus vampyrus ENSPVAG00000024254 I 0.814
ENSSHAG00000000353 Sarcophilus harrisii ENSSHAG00000000353 I 0.814
ENSSHAG00000018391 Sarcophilus harrisii ENSSHAG00000018391 I 0.814
EBF2 Sus scrofa ENSSSCG00000009655 I 0.814
Ebf1 Rattus norvegicus ENSRNOG00000028845 I 0.814
Ebf3 Rattus norvegicus ENSRNOG00000016102 I 0.814
EBF2 Pan troglodytes ENSPTRG00000003058 I 0.814
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I 0.814
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 0.814
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I 0.814
ENSACAG00000003097 Anolis carolinensis ENSACAG00000003097 I 0.814
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 0.814
EBF3 Otolemur garnettii ENSOGAG00000007572 I 0.814
EBF2 Otolemur garnettii ENSOGAG00000010783 I 0.814
ENSOARG00000012836 Ovis aries ENSOARG00000012836 I 0.814
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 0.814
ENSOANG00000004212 Ornithorhynchus anatinus ENSOANG00000004212 I 0.814
EBF1 Ornithorhynchus anatinus ENSOANG00000012338 I 0.814
EBF1 Otolemur garnettii ENSOGAG00000013992 I 0.814
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I 0.814
EBF1 Sus scrofa ENSSSCG00000017046 I 0.814
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 0.814
EBF4 Oryzias latipes ENSORLG00000020414 I 0.814
ebf3a Oryzias latipes ENSORLG00000005870 I 0.814
ENSONIG00000004376 Oreochromis niloticus ENSONIG00000004376 I 0.814
ENSONIG00000019141 Oreochromis niloticus ENSONIG00000019141 I 0.814
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.814
EBF1 Taeniopygia guttata ENSTGUG00000000593 I 0.814
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I 0.814
ENSMMUP00000028570 Macaca fascicularis ENSMMUP00000028570 I 0.814
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I 0.814
ENSBTAP00000053340-D1 Bos grunniens ENSBTAP00000053340-D1 I 0.814
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I 0.814
Alligator_sinensis_CCG017609.1 Alligator sinensis Alligator_sinensis_CCG017609.1 I 0.814
Brh_R001594 Buceros rhinoceros Brh_R001594 I 0.814
Gfo_R013267 Geospiza fortis Gfo_R013267 I 0.814
Ogr00083 Ophisaurus gracilis Ogr00083 I 0.814
ebf2 Xenopus tropicalis XB-GENE-971136 I 0.814
ebf2.S Xenopus laevis XB-GENE-971141 I 0.814
ebf3 Xenopus tropicalis XB-GENE-962543 I 0.814
Tal_R004164 Tyto alba Tal_R004164 I 0.814
Pvit_11383 Pogona vitticeps Pvit_11383 I 0.814
Pvit_16838 Pogona vitticeps Pvit_16838 I 0.814
Afo_R012023 Aptenodytes forsteri Afo_R012023 I 0.814
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.814
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.814
EBF3 Taeniopygia guttata ENSTGUG00000011600 I 0.814
ENSTSYG00000007975 Tarsius syrichta ENSTSYG00000007975 I 0.814
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 0.814
EBF1 Tupaia belangeri ENSTBEG00000007800 I 0.814
ENSSTOG00000007966 Ictidomys tridecemlineatus ENSSTOG00000007966 I 0.814
ENSSTOG00000011505 Ictidomys tridecemlineatus ENSSTOG00000011505 I 0.814
ENSTSYG00000019489 Tarsius syrichta ENSTSYG00000019489 I 0.814
EBF1 Tursiops truncatus ENSTTRG00000009929 I 0.814
Aan_R013029 Calypte anna Aan_R013029 I 0.814
Afo_R002906 Aptenodytes forsteri Afo_R002906 I 0.814
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I 0.814
ENSXMAG00000010668 Xiphophorus maculatus ENSXMAG00000010668 I 0.814
EBF3 Tursiops truncatus ENSTTRG00000014010 I 0.814
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.814
ENSSTOG00000006113 Ictidomys tridecemlineatus ENSSTOG00000006113 I 0.814
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.814
EBF2 Canis familiaris ENSCAFG00000008918 I 0.814
ENSLACG00000005494 Latimeria chalumnae ENSLACG00000005494 I 0.814
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I 0.814
EBF2 Callithrix jacchus ENSCJAG00000019921 I 0.814
EBF1 Dasypus novemcinctus ENSDNOG00000035396 I 0.814
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.814
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.814
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.814
ENSMGAG00000016563 Meleagris gallopavo ENSMGAG00000016563 I 0.814
ENSLOCG00000009282 Lepisosteus oculatus ENSLOCG00000009282 I 0.814
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I 0.814
EBF2 Loxodonta africana ENSLAFG00000022465 I 0.814
EBF2 Gorilla gorilla ENSGGOG00000001585 I 0.814
EBF1 Gorilla gorilla ENSGGOG00000000033 I 0.814
EBF2 Homo sapiens ENSG00000221818 D 0.814
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.814
EBF1 Homo sapiens ENSG00000164330 D 0.814
EBF3 Homo sapiens ENSG00000108001 D 0.814
ENSFCAG00000027202 Felis catus ENSFCAG00000027202 I 0.814
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.814
ENSGACG00000010053 Gasterosteus aculeatus ENSGACG00000010053 I 0.814
EBF3 Gallus gallus ENSGALG00000010461 I 0.814
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 0.814
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I 0.814
EBF2 Gallus gallus ENSGALG00000000242 I 0.814
EBF2 Bos taurus ENSBTAG00000040390 I 0.814
ENSAPLG00000012647 Anas platyrhynchos ENSAPLG00000012647 I 0.814
EBF3 Bos taurus ENSBTAG00000008272 I 0.814
ENSMPUG00000002449 Mustela putorius furo ENSMPUG00000002449 I 0.814
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 0.814
ENSCSAG00000010520 Chlorocebus sabaeus ENSCSAG00000010520 I 0.814
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.814
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.814
EBF3 Cavia porcellus ENSCPOG00000005096 I 0.814
ENSMPUG00000013414 Mustela putorius furo ENSMPUG00000013414 I 0.814
ENSNLEG00000001518 Nomascus leucogenys ENSNLEG00000001518 I 0.814
ENSNLEG00000004218 Nomascus leucogenys ENSNLEG00000004218 I 0.814
Ebf2 Mus musculus ENSMUSG00000022053 D 0.814
Ebf3 Mus musculus ENSMUSG00000010476 I 0.814
EBF2 Cavia porcellus ENSCPOG00000001463 I 0.814
EBF1 Macaca mulatta ENSMMUG00000021696 I 0.814
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 0.814
EBF1 Canis familiaris ENSCAFG00000017318 I 0.814
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.814
EBF1 Microcebus murinus ENSMICG00000010036 I 0.814
EBF3 Myotis lucifugus ENSMLUG00000005478 I 0.814
EBF3 Canis familiaris ENSCAFG00000013267 I 0.814
EBF3 Macaca mulatta ENSMMUG00000011447 I 0.814
ENSCSAG00000016068 Chlorocebus sabaeus ENSCSAG00000016068 I 0.814
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I 0.814
ENSBTAP00000042518-D1 Bos grunniens ENSBTAP00000042518-D1 I 0.791
EBF4 Canis familiaris ENSCAFG00000006631 I 0.791
ENSNLEG00000009110 Nomascus leucogenys ENSNLEG00000009110 I 0.791
EBF4 Cavia porcellus ENSCPOG00000004862 I 0.791
ebf1a Danio rerio ENSDARG00000099849 I 0.791
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I 0.791
ENSCSAG00000010974 Chlorocebus sabaeus ENSCSAG00000010974 I 0.791
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.791
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.791
EBF4 Bos taurus ENSBTAG00000037757 I 0.791
EBF4 Ochotona princeps ENSOPRG00000013703 I 0.791
EBF4 Macaca mulatta ENSMMUG00000021331 I 0.791
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I 0.791
EBF4 Myotis lucifugus ENSMLUG00000023832 I 0.791
EBF4 Monodelphis domestica ENSMODG00000005256 I 0.791
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I 0.791
Ebf4 Mus musculus ENSMUSG00000053552 D 0.791
EBF4 Oryctolagus cuniculus ENSOCUG00000023917 I 0.791
EBF4 Otolemur garnettii ENSOGAG00000004688 I 0.791
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I 0.791
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.791
EBF4 Sus scrofa ENSSSCG00000007171 I 0.791
Myotis_brandtii_EBF4_10032372 Myotis brandtii Myotis_brandtii_EBF4_10032372 I 0.791
ENSSTOG00000016352 Ictidomys tridecemlineatus ENSSTOG00000016352 I 0.791
EBF4 Homo sapiens ENSG00000088881 D 0.791
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.791
EBF4 Gorilla gorilla ENSGGOG00000015503 I 0.791
EBF4 Pteropus vampyrus ENSPVAG00000006830 I 0.791
Ebf4 Rattus norvegicus ENSRNOG00000007408 I 0.791
Myotis_brandtii_Ebf3_10024819 Myotis brandtii Myotis_brandtii_Ebf3_10024819 I 0.767
EBF1 Callithrix jacchus ENSCJAG00000019016 I 0.767
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I 0.767
Myotis_brandtii_EBF2_10005813 Myotis brandtii Myotis_brandtii_EBF2_10005813 I 0.767
EBF1 Takifugu rubripes ENSTRUG00000009320 I 0.767
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I 0.767
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I 0.767
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.767
ENSPMAG00000003287 Petromyzon marinus ENSPMAG00000003287 I 0.767
ENSPFOG00000009617 Poecilia formosa ENSPFOG00000009617 I 0.767
EBF1 Oryzias latipes ENSORLG00000007471 I 0.767
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I 0.767
ENSPFOG00000007531 Poecilia formosa ENSPFOG00000007531 I 0.767
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I 0.767
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I 0.767
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.767
Cmyd_10009821 Chelonia mydas Cmyd_10009821 I 0.767
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.767
ebf2 Takifugu rubripes ENSTRUG00000011528 I 0.767
ebf1b Danio rerio ENSDARG00000069196 I 0.767
MCINX016126 Melitaea cinxia MCINX016126 I 0.750
GH12956 Drosophila grimshawi FBgn0120434 I 0.750
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I 0.744
EBF1 Oryzias latipes ENSORLG00000002342 I 0.744
EBF1 Tetraodon nigroviridis ENSTNIG00000016148 I 0.744
PHUM119360 Pediculus humanus PHUM119360 I 0.744
AQUA007473 Anopheles quadriannulatus AQUA007473 I 0.721
AMIN008984 Anopheles minimus AMIN008984 I 0.721
ASIS004664 Anopheles sinensis ASIS004664 I 0.721
ASTEI06456 Anopheles stephensi ASTEI06456 I 0.721
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I 0.721
LLOJ000215 Lutzomyia longipalpis LLOJ000215 I 0.721
AMEM017983 Anopheles merus AMEM017983 I 0.721
AMEC016105 Anopheles melas AMEC016105 I 0.721
ACHR004409 Anopheles christyi ACHR004409 I 0.721
AARA002865 Anopheles arabiensis AARA002865 I 0.721
ACOM041529 Anopheles coluzzii ACOM041529 I 0.721
ADIR000236 Anopheles dirus ADIR000236 I 0.721
AFAF000230 Anopheles farauti AFAF000230 I 0.721
AEPI003553 Anopheles epiroticus AEPI003553 I 0.721
AFUN004906 Anopheles funestus AFUN004906 I 0.721
scaffold24-EXSNAP2012.58 Pristionchus exspectatus scaffold24-EXSNAP2012.58 I 0.703