CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0008s01240
(
Populus trichocarpa
)
FAR1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03101 (FAR1)
IPR004330
POPTR_0008s01240
T180092_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0008s01240.1
FAR1
65
143
TFYDTYAKRMGFSTHVGQFTRSRPDGPIVTWEFACSKEVFKRKNIESCNAVLRIVRKDSHSDNWAVTKFVEEHNHSLGT
POPTR_0008s01240.2
FAR1
65
143
TFYDTYAKRMGFSTHVGQFTRSRPDGPIVTWEFACSKEVFKRKNIESCNAVLRIVRKDSHSDNWAVTKFVEEHNHSLGT
POPTR_0008s01240.3
FAR1
65
143
TFYDTYAKRMGFSTHVGQFTRSRPDGPIVTWEFACSKEVFKRKNIESCNAVLRIVRKDSHSDNWAVTKFVEEHNHSLGT
POPTR_0008s01240.4
FAR1
65
143
TFYDTYAKRMGFSTHVGQFTRSRPDGPIVTWEFACSKEVFKRKNIESCNAVLRIVRKDSHSDNWAVTKFVEEHNHSLGT
POPTR_0008s01240.5
FAR1
65
143
TFYDTYAKRMGFSTHVGQFTRSRPDGPIVTWEFACSKEVFKRKNIESCNAVLRIVRKDSHSDNWAVTKFVEEHNHSLGT
Links
Other
FAR1
family TFs
Other
Populus trichocarpa
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0070s0640
Salix purpurea
SapurV1A.0070s0640
N
0.974
orange1.1g035792m.g
Citrus sinensis
orange1.1g035792m.g
N
0.792
VIT_13s0047g00330
Vitis vinifera
VIT_13s0047g00330
N
0.779
Ciclev10000255m.g
Citrus clementina
Ciclev10000255m.g
N
0.779
Gorai.012G021400
Gossypium raimondii
Gorai.012G021400
N
0.740
cassava1556.valid.m1
Manihot esculenta
cassava1556.valid.m1
N
0.740
mgf005364m
Mimulus guttatus
mgf005364m
N
0.727
mgf011248m
Mimulus guttatus
mgf011248m
N
0.727
Gorai.011G224000
Gossypium raimondii
Gorai.011G224000
N
0.714
TCM_044608
Theobroma cacao
TCM_044608
N
0.714
GLYMA08G24400
Glycine max
GLYMA08G24400
N
0.701