TCM_002030 (Theobroma cacao)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 TCM_002030 T180484_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.909 0.909
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.909 0.909
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.705 0.705
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX93191 FAR1 79 166

Links

Other FAR1 family TFs
Other Theobroma cacao TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AATE012213 Anopheles atroparvus AATE012213 I 0.000
ACEP21757 Atta cephalotes ACEP21757 I 0.000
ACUA005738 Anopheles culicifacies ACUA005738 I 0.000
ACYPI008619 Acyrthosiphon pisum ACYPI008619 I 0.000
ADAC004790 Anopheles darlingi ADAC004790 I 0.000
AFAF008430 Anopheles farauti AFAF008430 I 0.000
AFUN002458 Anopheles funestus AFUN002458 I 0.000
AGAP004331 Anopheles gambiae AGAP004331 I 0.000
AMAM014008 Anopheles maculatus AMAM014008 I 0.000
BGLB012448 Biomphalaria glabrata BGLB012448 I 0.000
CapteG4919 Capitella teleta CapteG4919 I 0.000
CGI_10011936 Crassostrea gigas CGI_10011936 I 0.000
CLEC000700 Cimex lectularius CLEC000700 I 0.000
CPIJ006366 Culex quinquefasciatus CPIJ006366 I 0.000
CpipJ_CPIJ006366 Culex pipiens CpipJ_CPIJ006366 I 0.000
gl Drosophila melanogaster FBgn0004618 D 0.000
gl Drosophila virilis FBgn0015211 I 0.000
GA20515 Drosophila pseudoobscura FBgn0080509 I 0.000
GF18117 Drosophila ananassae FBgn0095135 I 0.000
GG16477 Drosophila erecta FBgn0108708 I 0.000
GH19229 Drosophila grimshawi FBgn0126695 I 0.000
GI24263 Drosophila mojavensis FBgn0146986 I 0.000
GM18708 Drosophila sechellia FBgn0173613 I 0.000
GD20175 Drosophila simulans FBgn0191653 I 0.000
GK11495 Drosophila willistoni FBgn0213506 I 0.000
GE25205 Drosophila yakuba FBgn0242289 I 0.000
GB43258 Apis mellifera GB43258 I 0.000
HelroG86767 Helobdella robusta HelroG86767 I 0.000
HMEL016965 Heliconius melpomene HMEL016965 I 0.000
ISCW013678 Ixodes scapularis ISCW013678 I 0.000
KGM_06609 Danaus plexippus KGM_06609 I 0.000
LCUP002895 Lucilia cuprina LCUP002895 I 0.000
LotgiG155751 Lottia gigantea LotgiG155751 I 0.000
MCINX014711 Melitaea cinxia MCINX014711 I 0.000
MDOA012721 Musca domestica MDOA012721 I 0.000
ML19062a Mnemiopsis leidyi ML19062a I 0.000
NV10631 Nasonia vitripennis NV10631 I 0.000
Ocbimv22030200m.g Octopus bimaculoides Ocbimv22030200m.g I 0.000
PHUM530160 Pediculus humanus PHUM530160 I 0.000
PXEA_0003135501 Protopolystoma xenopodis PXEA_0003135501 I 0.000
Sakowv30008117m.g Saccoglossus kowalevskii Sakowv30008117m.g I 0.000
SMAR000758 Strigamia maritima SMAR000758 I 0.000
SPU_007599 Strongylocentrotus purpuratus SPU_007599 I 0.000
TC012565 Tribolium castaneum TC012565 I 0.000
tetur07g01570 Tetranychus urticae tetur07g01570 I 0.000
YQE_07567 Dendroctonus ponderosae YQE_07567 I 0.000