gene24215-v1.0-hybrid (Fragaria vesca)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 gene24215-v1.0-hybrid T181450_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FAR1
M06880_2.00
Arabidopsis thaliana
NNYHCACGCGCYDNH

DNHRGCGCGTGDRNN
Dap-seq
OMalley et al.(2016)
FAR1_col_a
0.898 0.898
FAR1
M06881_2.00
Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD

HRGCGCGTGDRNNHNHVNNNN
Dap-seq
OMalley et al.(2016)
FAR1_colamp_a
0.898 0.898
FHY3
M08114_2.00
Arabidopsis thaliana
NHCACGCGCTNN

NNAGCGCGTGDN
ChIP-seq
Mathelier et al.(2014)
MA0557.1
0.705 0.705
FHY3
M09540_2.00
Arabidopsis thaliana
NHSACGCGCBNN

NNVGCGCGTSDN
Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna24215.1-v1.0-hybrid FAR1 76 163

Links

Other FAR1 family TFs
Other Fragaria vesca TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30106.m000672 Ricinus communis 30106.m000672 I 0.920
Bo6g054750 Brassica oleracea Bo6g054750 I 0.844
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.878
Bra040696 Brassica rapa Bra040696 I 0.844
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 0.921
Carubv10004178m.g Capsella rubella Carubv10004178m.g I 0.921
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 0.921
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.920
cassava31125.valid.m1 Manihot esculenta cassava31125.valid.m1 I 0.727
cassava31126.valid.m1 Manihot esculenta cassava31126.valid.m1 I 0.727
cassava31127.valid.m1 Manihot esculenta cassava31127.valid.m1 I 0.727
cassava31128.valid.m1 Manihot esculenta cassava31128.valid.m1 I 0.727
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.744
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.920
Eucgr.A00908 Eucalyptus grandis Eucgr.A00908 I 0.711
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.943
evm.TU.supercontig_8.288 Carica papaya evm.TU.supercontig_8.288 I 0.711
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.955
FAR1 Arabidopsis thaliana AT4G15090 D 0.878
FHY3 Vitis vinifera VIT_03s0017g01780 I 0.739
FHY3 Arabidopsis thaliana AT3G22170 D 0.705
gene24214-v1.0-hybrid Fragaria vesca gene24214-v1.0-hybrid I 0.711
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.733
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.733
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.943
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.932
Gorai.005G134200 Gossypium raimondii Gorai.005G134200 I 0.722
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.943
MDP0000286803 Malus domestica MDP0000286803 I 0.739
mgf008053m Mimulus guttatus mgf008053m I 0.898
mgf009829m Mimulus guttatus mgf009829m I 0.700
mgf014333m Mimulus guttatus mgf014333m I 0.700
PK04639.1 Cannabis sativa PK04639.1 I 0.966
PK08903.1 Cannabis sativa PK08903.1 I 0.739
Pm014858 Prunus mume Pm014858 I 0.989
Pm014859 Prunus mume Pm014859 I 0.722
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.966
POPTR_0006s02150 Populus trichocarpa POPTR_0006s02150 I 0.722
POPTR_0016s01980 Populus trichocarpa POPTR_0016s01980 I 0.711
PRUPE_ppa001344mg Prunus persica PRUPE_ppa001344mg I 0.722
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.989
SapurV1A.0154s0240 Salix purpurea SapurV1A.0154s0240 I 0.711
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.955
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.846
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.711
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.886
TCM_002030 Theobroma cacao TCM_002030 I 0.932
TCM_013043 Theobroma cacao TCM_013043 I 0.808
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.920