CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G397616
(
Zea mays
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
GRMZM2G397616
T193572_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA20
M06884_2.00
Arabidopsis thaliana
GATCBGAT
ATCVGATC
Dap-seq
OMalley et al.(2016)
GATA20_col_a
0.829
0.889
GATA20
M06885_2.00
Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND
Dap-seq
OMalley et al.(2016)
GATA20_colamp_a
0.829
0.889
GATA19
M06893_2.00
Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV
Dap-seq
OMalley et al.(2016)
GATA19_col_a
0.809
0.889
GATA19
M06894_2.00
Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND
Dap-seq
OMalley et al.(2016)
GATA19_colamp_a
0.809
0.889
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G397616_P01
GATA
130
165
CASCGTTSTPLWRNGPRGPKSLCNACGIRFRKKERR
Links
Other
GATA
family TFs
Other
Zea mays
TFs
77 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy