CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0003s08080
(
Populus trichocarpa
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
POPTR_0003s08080
T194875_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA26
M02001_2.00
Arabidopsis thaliana
NNKATBNNNN
NNNNVATMNN
PBM
Weirauch et al.(2014)
pTH7490
0.867
0.944
GATA27
M02005_2.00
Arabidopsis thaliana
NNGATBNNN
NNNVATCNN
PBM
Weirauch et al.(2014)
pTH7492
0.867
0.944
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0003s08080.1
GATA
7
42
CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL
POPTR_0003s08080.2
GATA
7
42
CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL
Links
Other
GATA
family TFs
Other
Populus trichocarpa
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy