CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.218190
(
Cucumis sativus
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
Cucsa.218190
T196057_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN
NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.843
0.806
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.843
0.806
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN
NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.842
0.861
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN
NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.832
0.806
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.810
0.861
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.218190.1
GATA
225
262
CTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGIL
Links
Other
GATA
family TFs
Other
Cucumis sativus
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_30853
Aegilops tauschii
F775_30853
I
0.000
F775_25840
Aegilops tauschii
F775_25840
I
0.000
AMTR_s00077p00103580
Amborella trichopoda
AMTR_s00077p00103580
I
0.000
AMTR_s00077p00103880
Amborella trichopoda
AMTR_s00077p00103880
I
0.000
Aquca_027_00037
Aquilegia coerulea
Aquca_027_00037
I
0.000
Aquca_013_00135
Aquilegia coerulea
Aquca_013_00135
I
0.000
WRKY55
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4001817
I
0.000
WRKY70
Arabidopsis lyrata
fgenesh2_kg.5__2072__AT3G56400.1
I
0.000
fgenesh1_pm.C_scaffold_4001818
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4001818
I
0.000
Al_scaffold_0004_2305
Arabidopsis lyrata
Al_scaffold_0004_2305
I
0.000
WRKY70
Arabidopsis thaliana
AT3G56400
D
0.000
WRKY54
Arabidopsis thaliana
AT2G40750
I
0.000
WRKY55
Arabidopsis thaliana
AT2G40740
D
0.000
Bostr.9345s0061
Boechera stricta
Bostr.9345s0061
I
0.000
Bostr.20505s0112
Boechera stricta
Bostr.20505s0112
I
0.000
Bostr.9345s0060
Boechera stricta
Bostr.9345s0060
I
0.000
BRADI3G34850
Brachypodium distachyon
BRADI3G34850
I
0.000
BRADI4G28280
Brachypodium distachyon
BRADI4G28280
I
0.000
Bo4g190380
Brassica oleracea
Bo4g190380
I
0.000
Bo8g090820
Brassica oleracea
Bo8g090820
I
0.000
Bo00913s010
Brassica oleracea
Bo00913s010
I
0.000
Bo01002s040
Brassica oleracea
Bo01002s040
I
0.000
Bo3g035130
Brassica oleracea
Bo3g035130
I
0.000
Bo3g035140
Brassica oleracea
Bo3g035140
I
0.000
Bo4g012750
Brassica oleracea
Bo4g012750
I
0.000
Bo4g190390
Brassica oleracea
Bo4g190390
I
0.000
Bo6g071110
Brassica oleracea
Bo6g071110
I
0.000
Bo7g109140
Brassica oleracea
Bo7g109140
I
0.000
Bra007243
Brassica rapa
Bra007243
I
0.000
Bra019265
Brassica rapa
Bra019265
I
0.000
Bra016975
Brassica rapa
Bra016975
I
0.000
Bra014692
Brassica rapa
Bra014692
I
0.000
Bra000202
Brassica rapa
Bra000202
I
0.000
Bra000203
Brassica rapa
Bra000203
I
0.000
Bra002421
Brassica rapa
Bra002421
I
0.000
Bra003239
Brassica rapa
Bra003239
I
0.000
Bra004586
Brassica rapa
Bra004586
I
0.000
Bra016974
Brassica rapa
Bra016974
I
0.000
Bra014693
Brassica rapa
Bra014693
I
0.000
Bra013732
Brassica rapa
Bra013732
I
0.000
PK03324.1
Cannabis sativa
PK03324.1
I
0.000
PK21378.1
Cannabis sativa
PK21378.1
I
0.000
Cagra.1642s0039
Capsella grandiflora
Cagra.1642s0039
I
0.000
Cagra.1642s0038
Capsella grandiflora
Cagra.1642s0038
I
0.000
Cagra.1226s0044
Capsella grandiflora
Cagra.1226s0044
I
0.000
Cagra.0925s0056
Capsella grandiflora
Cagra.0925s0056
I
0.000
Carubv10006884m.g
Capsella rubella
Carubv10006884m.g
I
0.000
Carubv10024972m.g
Capsella rubella
Carubv10024972m.g
I
0.000
Carubv10017349m.g
Capsella rubella
Carubv10017349m.g
I
0.000
Carubv10023773m.g
Capsella rubella
Carubv10023773m.g
I
0.000
evm.TU.supercontig_86.64
Carica papaya
evm.TU.supercontig_86.64
I
0.000
evm.TU.supercontig_86.65
Carica papaya
evm.TU.supercontig_86.65
I
0.000
evm.TU.supercontig_19.44
Carica papaya
evm.TU.supercontig_19.44
I
0.000
Ca_12915
Cicer arietinum
Ca_12915
I
0.000
Ca_09495
Cicer arietinum
Ca_09495
I
0.000
Ca_04100
Cicer arietinum
Ca_04100
I
0.000
Ca_18932
Cicer arietinum
Ca_18932
I
0.000
Cla015244
Citrullus lanatus
Cla015244
I
0.000
Cla007424
Citrullus lanatus
Cla007424
I
0.000
Cla018337
Citrullus lanatus
Cla018337
I
0.000
Ciclev10033384m.g
Citrus clementina
Ciclev10033384m.g
I
0.000
Ciclev10012055m.g
Citrus clementina
Ciclev10012055m.g
I
0.000
Ciclev10032192m.g
Citrus clementina
Ciclev10032192m.g
I
0.000
orange1.1g021598m.g
Citrus sinensis
orange1.1g021598m.g
I
0.000
orange1.1g020291m.g
Citrus sinensis
orange1.1g020291m.g
I
0.000
orange1.1g018407m.g
Citrus sinensis
orange1.1g018407m.g
I
0.000
Cucsa.078810
Cucumis sativus
Cucsa.078810
I
0.000
Cucsa.177060
Cucumis sativus
Cucsa.177060
I
0.000
Eucgr.G03144
Eucalyptus grandis
Eucgr.G03144
I
0.000
Eucgr.G03145
Eucalyptus grandis
Eucgr.G03145
I
0.000
Eucgr.K01289
Eucalyptus grandis
Eucgr.K01289
I
0.000
Eucgr.J00107
Eucalyptus grandis
Eucgr.J00107
I
0.000
Eucgr.J00106
Eucalyptus grandis
Eucgr.J00106
I
0.000
Thhalv10025724m.g
Eutrema salsugineum
Thhalv10025724m.g
I
0.000
Thhalv10006146m.g
Eutrema salsugineum
Thhalv10006146m.g
I
0.000
Thhalv10017926m.g
Eutrema salsugineum
Thhalv10017926m.g
I
0.000
gene13546-v1.0-hybrid
Fragaria vesca
gene13546-v1.0-hybrid
I
0.000
gene13549-v1.0-hybrid
Fragaria vesca
gene13549-v1.0-hybrid
I
0.000
gene13554-v1.0-hybrid
Fragaria vesca
gene13554-v1.0-hybrid
I
0.000
gene13547-v1.0-hybrid
Fragaria vesca
gene13547-v1.0-hybrid
I
0.000
GLYMA14G36430
Glycine max
GLYMA14G36430
I
0.000
GLYMA13G34261
Glycine max
GLYMA13G34261
I
0.000
GLYMA13G34251
Glycine max
GLYMA13G34251
I
0.000
GLYMA09G41050
Glycine max
GLYMA09G41050
I
0.000
GLYMA06G14720
Glycine max
GLYMA06G14720
I
0.000
GLYMA19G44380
Glycine max
GLYMA19G44380
I
0.000
GLYMA13G34240
Glycine max
GLYMA13G34240
I
0.000
GLYMA18G44560
Glycine max
GLYMA18G44560
I
0.000
GLYMA13G34281
Glycine max
GLYMA13G34281
I
0.000
GLYMA03G00460
Glycine max
GLYMA03G00460
I
0.000
GLYMA04G40130
Glycine max
GLYMA04G40130
I
0.000
GLYMA05G29921
Glycine max
GLYMA05G29921
I
0.000
GLYMA16G34590
Glycine max
GLYMA16G34590
I
0.000
Gorai.013G008300
Gossypium raimondii
Gorai.013G008300
I
0.000
Gorai.009G292600
Gossypium raimondii
Gorai.009G292600
I
0.000
Gorai.005G003900
Gossypium raimondii
Gorai.005G003900
I
0.000
MLOC_45055
Hordeum vulgare
MLOC_45055
I
0.000
MLOC_71897
Hordeum vulgare
MLOC_71897
I
0.000
LPERR03G14340
Leersia perrieri
LPERR03G14340
I
0.000
LPERR08G11030
Leersia perrieri
LPERR08G11030
I
0.000
LPERR09G04330
Leersia perrieri
LPERR09G04330
I
0.000
Lus10025216.g
Linum usitatissimum
Lus10025216.g
I
0.000
Lus10029021.g
Linum usitatissimum
Lus10029021.g
I
0.000
Lus10014177.g
Linum usitatissimum
Lus10014177.g
I
0.000
Lus10025133.g
Linum usitatissimum
Lus10025133.g
I
0.000
Lus10034244.g
Linum usitatissimum
Lus10034244.g
I
0.000
Lus10030517.g
Linum usitatissimum
Lus10030517.g
I
0.000
Lus10012870.g
Linum usitatissimum
Lus10012870.g
I
0.000
LjT41F16.60.nd
Lotus japonicus
LjT41F16.60.nd
I
0.000
chr1.CM0320.400.nd
Lotus japonicus
chr1.CM0320.400.nd
I
0.000
MDP0000754989
Malus domestica
MDP0000754989
I
0.000
MDP0000175240
Malus domestica
MDP0000175240
I
0.000
MDP0000578301
Malus domestica
MDP0000578301
I
0.000
cassava36286.valid.m1
Manihot esculenta
cassava36286.valid.m1
I
0.000
cassava23183.valid.m1
Manihot esculenta
cassava23183.valid.m1
I
0.000
cassava25180.valid.m1
Manihot esculenta
cassava25180.valid.m1
I
0.000
cassava7524.valid.m1
Manihot esculenta
cassava7524.valid.m1
I
0.000
cassava43790.valid.m1
Manihot esculenta
cassava43790.valid.m1
I
0.000
cassava7525.valid.m1
Manihot esculenta
cassava7525.valid.m1
I
0.000
cassava7221.valid.m1
Manihot esculenta
cassava7221.valid.m1
I
0.000
MTR_2g075700
Medicago truncatula
MTR_2g075700
I
0.000
MTR_2g075690
Medicago truncatula
MTR_2g075690
I
0.000
MTR_2g075750
Medicago truncatula
MTR_2g075750
I
0.000
MTR_3g093830
Medicago truncatula
MTR_3g093830
I
0.000
MTR_5g067700
Medicago truncatula
MTR_5g067700
I
0.000
MTR_2g075680
Medicago truncatula
MTR_2g075680
I
0.000
MTR_8g005750
Medicago truncatula
MTR_8g005750
I
0.000
MTR_7g073380
Medicago truncatula
MTR_7g073380
I
0.000
MTR_7g073430
Medicago truncatula
MTR_7g073430
I
0.000
MTR_8g027860
Medicago truncatula
MTR_8g027860
I
0.000
MTR_8g032510
Medicago truncatula
MTR_8g032510
N
0.000
MTR_0002s1250
Medicago truncatula
MTR_0002s1250
I
0.000
MTR_2g075610
Medicago truncatula
MTR_2g075610
I
0.000
mgf009193m
Mimulus guttatus
mgf009193m
I
0.000
mgf002542m
Mimulus guttatus
mgf002542m
I
0.000
GSMUA_Achr8G01730_001
Musa acuminata
GSMUA_Achr8G01730_001
I
0.000
GSMUA_Achr9G04830_001
Musa acuminata
GSMUA_Achr9G04830_001
I
0.000
OBART09G06020
Oryza barthii
OBART09G06020
I
0.000
OB09G14040
Oryza brachyantha
OB09G14040
I
0.000
ORGLA08G0116200
Oryza glaberrima
ORGLA08G0116200
I
0.000
OGLUM07G10380
Oryza glumaepatula
OGLUM07G10380
I
0.000
OGLUM09G06630
Oryza glumaepatula
OGLUM09G06630
I
0.000
BGIOSGA040489
Oryza indica
BGIOSGA040489
I
0.000
BGIOSGA030535
Oryza indica
BGIOSGA030535
I
0.000
OMERI08G11390
Oryza meridionalis
OMERI08G11390
I
0.000
OMERI09G04750
Oryza meridionalis
OMERI09G04750
I
0.000
ONIVA08G13920
Oryza nivara
ONIVA08G13920
I
0.000
ONIVA09G05410
Oryza nivara
ONIVA09G05410
I
0.000
ORUFI08G15010
Oryza rufipogon
ORUFI08G15010
I
0.000
ORUFI09G06720
Oryza rufipogon
ORUFI09G06720
I
0.000
OS08G0386200
Oryza sativa
OS08G0386200
I
0.000
OS09G0334500
Oryza sativa
OS09G0334500
I
0.000
Pavir.Ba02545
Panicum virgatum
Pavir.Ba02545
I
0.000
Pavir.Bb02088
Panicum virgatum
Pavir.Bb02088
I
0.000
Pavir.Fa01520
Panicum virgatum
Pavir.Fa01520
I
0.000
Pavir.Gb01556
Panicum virgatum
Pavir.Gb01556
I
0.000
Pavir.J37854
Panicum virgatum
Pavir.J37854
I
0.000
PDK_20s1314561g002
Phoenix dactylifera
PDK_20s1314561g002
I
0.000
PDK_20s1519811g002
Phoenix dactylifera
PDK_20s1519811g002
I
0.000
PDK_20s1521921g002
Phoenix dactylifera
PDK_20s1521921g002
I
0.000
POPTR_0016s14490
Populus trichocarpa
POPTR_0016s14490
I
0.000
POPTR_0013s09470
Populus trichocarpa
POPTR_0013s09470
I
0.000
POPTR_0002s17010
Populus trichocarpa
POPTR_0002s17010
I
0.000
Pm003013
Prunus mume
Pm003013
I
0.000
Pm019286
Prunus mume
Pm019286
I
0.000
Pm003015
Prunus mume
Pm003015
I
0.000
Pm003014
Prunus mume
Pm003014
I
0.000
PRUPE_ppa020736mg
Prunus persica
PRUPE_ppa020736mg
I
0.000
PRUPE_ppa025912mg
Prunus persica
PRUPE_ppa025912mg
I
0.000
PRUPE_ppa026125mg
Prunus persica
PRUPE_ppa026125mg
I
0.000
PRUPE_ppa026704mg
Prunus persica
PRUPE_ppa026704mg
I
0.000
30174.m008651
Ricinus communis
30174.m008651
I
0.000
29729.m002369
Ricinus communis
29729.m002369
I
0.000
29915.m000479
Ricinus communis
29915.m000479
I
0.000
SapurV1A.0065s0580
Salix purpurea
SapurV1A.0065s0580
I
0.000
SapurV1A.0190s0060
Salix purpurea
SapurV1A.0190s0060
I
0.000
SapurV1A.0356s0010
Salix purpurea
SapurV1A.0356s0010
I
0.000
SapurV1A.0914s0120
Salix purpurea
SapurV1A.0914s0120
I
0.000
SapurV1A.2295s0010
Salix purpurea
SapurV1A.2295s0010
I
0.000
SELMODRAFT_29692
Selaginella moellendorffii
SELMODRAFT_29692
I
0.000
SELMODRAFT_113487
Selaginella moellendorffii
SELMODRAFT_113487
I
0.000
Si030531m.g
Setaria italica
Si030531m.g
I
0.000
Si012735m.g
Setaria italica
Si012735m.g
I
0.000
Si015433m.g
Setaria italica
Si015433m.g
I
0.000
Si030528m.g
Setaria italica
Si030528m.g
I
0.000
Solyc03g095770.2
Solanum lycopersicum
Solyc03g095770.2
I
0.000
Solyc05g050330.2
Solanum lycopersicum
Solyc05g050330.2
I
0.000
Solyc09g015770.2
Solanum lycopersicum
Solyc09g015770.2
I
0.000
PGSC0003DMG400008391
Solanum tuberosum
PGSC0003DMG400008391
I
0.000
PGSC0003DMG400029207
Solanum tuberosum
PGSC0003DMG400029207
I
0.000
PGSC0003DMG402033880
Solanum tuberosum
PGSC0003DMG402033880
N
0.000
PGSC0003DMG400020608
Solanum tuberosum
PGSC0003DMG400020608
I
0.000
PGSC0003DMG400027582
Solanum tuberosum
PGSC0003DMG400027582
I
0.000
Sb07g019400
Sorghum bicolor
Sb07g019400
I
0.000
Sb02g022290
Sorghum bicolor
Sb02g022290
I
0.000
TCM_045556
Theobroma cacao
TCM_045556
I
0.000
TCM_019689
Theobroma cacao
TCM_019689
I
0.000
TCM_006116
Theobroma cacao
TCM_006116
I
0.000
TCM_006109
Theobroma cacao
TCM_006109
I
0.000
TCM_006103
Theobroma cacao
TCM_006103
I
0.000
Traes_5DL_C93641E43
Triticum aestivum
Traes_5DL_C93641E43
I
0.000
Traes_5BL_0A3D332A8
Triticum aestivum
Traes_5BL_0A3D332A8
I
0.000
Traes_2BS_B65714572
Triticum aestivum
Traes_2BS_B65714572
I
0.000
Traes_2AS_6269D889E
Triticum aestivum
Traes_2AS_6269D889E
I
0.000
TRIUR3_30416
Triticum urartu
TRIUR3_30416
I
0.000
VIT_13s0067g03140
Vitis vinifera
VIT_13s0067g03140
I
0.000
VIT_08s0058g01390
Vitis vinifera
VIT_08s0058g01390
I
0.000
AC205562.3_FG002
Zea mays
AC205562.3_FG002
I
0.000
GRMZM2G324999
Zea mays
GRMZM2G324999
I
0.000
GRMZM2G163418
Zea mays
GRMZM2G163418
I
0.000
GRMZM2G061408
Zea mays
GRMZM2G061408
I
0.000
GRMZM2G025895
Zea mays
GRMZM2G025895
I
0.000