CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10020684.g
(
Linum usitatissimum
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
Lus10020684.g
T196636_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10020684
GATA
24
65
HDGKKLCIDCKTSRTPLWRTGPAGPKSLCNACGIRHRKRRRA
Links
Other
GATA
family TFs
Other
Linum usitatissimum
TFs
85 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29889.m003248
Ricinus communis
29889.m003248
I
0.807
30128.m008883
Ricinus communis
30128.m008883
N
0.807
AMTR_s00147p00053080
Amborella trichopoda
AMTR_s00147p00053080
N
0.848
Aquca_003_00608
Aquilegia coerulea
Aquca_003_00608
N
0.807
BGIOSGA000005
Oryza indica
BGIOSGA000005
I
0.823
Bo00847s050
Brassica oleracea
Bo00847s050
I
0.812
Bostr.15774s0060
Boechera stricta
Bostr.15774s0060
I
0.812
Bra020650
Brassica rapa
Bra020650
I
0.839
BRADI2G62660
Brachypodium distachyon
BRADI2G62660
I
0.823
Carubv10027332m.g
Capsella rubella
Carubv10027332m.g
I
0.812
cassava15577.m1
Manihot esculenta
cassava15577.m1
I
0.808
cassava15588.m1
Manihot esculenta
cassava15588.m1
I
0.808
cassava37139.valid.m1
Manihot esculenta
cassava37139.valid.m1
I
0.807
cassava43030.valid.m1
Manihot esculenta
cassava43030.valid.m1
I
0.812
Ca_02992
Cicer arietinum
Ca_02992
I
0.811
Ciclev10003698m.g
Citrus clementina
Ciclev10003698m.g
I
0.807
Ciclev10006161m.g
Citrus clementina
Ciclev10006161m.g
I
0.808
Ciclev10022856m.g
Citrus clementina
Ciclev10022856m.g
I
0.807
Cla005266
Citrullus lanatus
Cla005266
N
0.823
Cla009422
Citrullus lanatus
Cla009422
I
0.808
Cla022104
Citrullus lanatus
Cla022104
I
0.812
Cucsa.069460
Cucumis sativus
Cucsa.069460
I
0.808
Cucsa.252730
Cucumis sativus
Cucsa.252730
I
0.812
Eucgr.A00193
Eucalyptus grandis
Eucgr.A00193
I
0.812
Eucgr.H04023
Eucalyptus grandis
Eucgr.H04023
I
0.808
evm.TU.supercontig_151.51
Carica papaya
evm.TU.supercontig_151.51
I
0.808
evm.TU.supercontig_48.133
Carica papaya
evm.TU.supercontig_48.133
I
0.808
evm.TU.supercontig_9.102
Carica papaya
evm.TU.supercontig_9.102
I
0.812
gene05175-v1.0-hybrid
Fragaria vesca
gene05175-v1.0-hybrid
I
0.812
GLYMA07G37190
Glycine max
GLYMA07G37190
I
0.807
GLYMA14G10830
Glycine max
GLYMA14G10830
N
0.816
GLYMA17G03410
Glycine max
GLYMA17G03410
I
0.807
Gorai.005G065300
Gossypium raimondii
Gorai.005G065300
I
0.812
Gorai.007G125000
Gossypium raimondii
Gorai.007G125000
I
0.807
Gorai.008G142200
Gossypium raimondii
Gorai.008G142200
I
0.807
Gorai.013G127900
Gossypium raimondii
Gorai.013G127900
I
0.808
Gorai.013G206400
Gossypium raimondii
Gorai.013G206400
N
0.809
LjSGA_011217.1
Lotus japonicus
LjSGA_011217.1
I
0.811
LPERR04G11580
Leersia perrieri
LPERR04G11580
I
0.823
Lus10016849.g
Linum usitatissimum
Lus10016849.g
I
0.812
Lus10029863.g
Linum usitatissimum
Lus10029863.g
N
0.853
Lus10037721.g
Linum usitatissimum
Lus10037721.g
I
0.812
mgf003937m
Mimulus guttatus
mgf003937m
I
0.812
mgf011737m
Mimulus guttatus
mgf011737m
N
0.823
MLOC_54886
Hordeum vulgare
MLOC_54886
I
0.823
MTR_4g121110
Medicago truncatula
MTR_4g121110
I
0.811
OB01G55040
Oryza brachyantha
OB01G55040
I
0.823
OBART01G45830
Oryza barthii
OBART01G45830
I
0.823
OGLUM01G50190
Oryza glumaepatula
OGLUM01G50190
I
0.823
OLONG_011157
Oryza longistaminata
OLONG_011157
I
0.823
ONIVA01G52080
Oryza nivara
ONIVA01G52080
I
0.823
orange1.1g030971m.g
Citrus sinensis
orange1.1g030971m.g
I
0.807
orange1.1g032112m.g
Citrus sinensis
orange1.1g032112m.g
I
0.808
orange1.1g033001m.g
Citrus sinensis
orange1.1g033001m.g
I
0.807
ORGLA01G0395900
Oryza glaberrima
ORGLA01G0395900
I
0.823
ORUFI01G49320
Oryza rufipogon
ORUFI01G49320
I
0.823
OS01G0976800
Oryza sativa
OS01G0976800
I
0.823
Pavir.Eb04066
Panicum virgatum
Pavir.Eb04066
I
0.823
PGSC0003DMG400004624
Solanum tuberosum
PGSC0003DMG400004624
I
0.808
PK18820.1
Cannabis sativa
PK18820.1
I
0.808
PK21934.1
Cannabis sativa
PK21934.1
I
0.807
Pm003128
Prunus mume
Pm003128
I
0.847
Pm008287
Prunus mume
Pm008287
I
0.812
POPTR_0005s02040
Populus trichocarpa
POPTR_0005s02040
I
0.808
POPTR_0008s22950
Populus trichocarpa
POPTR_0008s22950
I
0.811
POPTR_0010s00360
Populus trichocarpa
POPTR_0010s00360
I
0.811
PRUPE_ppa013171mg
Prunus persica
PRUPE_ppa013171mg
I
0.812
PRUPE_ppa015310mg
Prunus persica
PRUPE_ppa015310mg
I
0.847
SapurV1A.0107s0060
Salix purpurea
SapurV1A.0107s0060
I
0.808
SapurV1A.0186s0560
Salix purpurea
SapurV1A.0186s0560
I
0.808
SapurV1A.0739s0060
Salix purpurea
SapurV1A.0739s0060
I
0.811
SapurV1A.2413s0010
Salix purpurea
SapurV1A.2413s0010
I
0.811
Sb03g047520
Sorghum bicolor
Sb03g047520
I
0.823
GATA16
Arabidopsis lyrata
scaffold_801309.1
I
0.812
Si002983m.g
Setaria italica
Si002983m.g
I
0.823
Solyc12g099370.1
Solanum lycopersicum
Solyc12g099370.1
I
0.808
TCM_004753
Theobroma cacao
TCM_004753
I
0.820
TCM_021303
Theobroma cacao
TCM_021303
I
0.812
TCM_026732
Theobroma cacao
TCM_026732
I
0.808
Thhalv10005103m.g
Eutrema salsugineum
Thhalv10005103m.g
I
0.812
TRAES3BF026000060CFD_g
Triticum aestivum
TRAES3BF026000060CFD_g
I
0.823
Traes_3AL_6DE434492
Triticum aestivum
Traes_3AL_6DE434492
I
0.823
TRIUR3_03165
Triticum urartu
TRIUR3_03165
I
0.823
VIT_05s0077g01450
Vitis vinifera
VIT_05s0077g01450
I
0.808
VIT_14s0060g01520
Vitis vinifera
VIT_14s0060g01520
I
0.834