CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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T265_00115
(
Opisthorchis viverrini
)
GCM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03615 (GCM)
IPR003902
T265_00115
T198275_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.619
0.619
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.619
0.619
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.619
0.619
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.619
0.619
For this family, TFs with SR scores >
0.607
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
T265_00115
GCM
188
325
FDTFTMWPQGHCRYAYQKSASEGARRHASGWAMRNTNNHNALILKKSCLGVLLCSSKTCSLAMRPAICDKARRRQEGRACCMPNCTGIIYNQPCRGHSGFPVTHFWREHGDTVYFQAKGVHDHVRPDLKPVRDTAARR
Links
Other
GCM
family TFs
Other
Opisthorchis viverrini
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy