Grhl1 (Rattus norvegicus)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04516 (CP2) IPR007604 ENSRNOG00000054989 T199219_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GRHL1
M03071_2.00
Homo sapiens
RACYKGWHNDWCMGGTT

AACCKGWHNDWCMRGTY
SELEX
Jolma et al.(2013)
GRHL1_1
0.847 0.847
GRHL1
M03072_2.00
Homo sapiens
DAACCGGTTH

DAACCGGTTH
SELEX
Jolma et al.(2013)
GRHL1_2
0.847 0.847
GRHL1
M03073_2.00
Homo sapiens
HWAACCGGTTTD

HAAACCGGTTWD
SELEX
Jolma et al.(2013)
GRHL1_3
0.847 0.847
GRHL1
M04887_2.00
Homo sapiens
DAACCGGTTH

DAACCGGTTH
SELEX
Yin et al.(2017)
GRHL1_eDBD_HT-SELEX
0.847 0.847
GRHL1
M04888_2.00
Homo sapiens
DAACMKGTTH

DAACMKGTTH
SELEX
Yin et al.(2017)
GRHL1_eDBD_Methyl-HT-SELEX
0.847 0.847
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000068887 Grainyhead 135 349

Links

Other Grainyhead family TFs
Other Rattus norvegicus TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29417.m000034 Ricinus communis 29417.m000034 N 0.000
30090.m000247 Ricinus communis 30090.m000247 N 0.000
AMTR_s00032p00241350 Amborella trichopoda AMTR_s00032p00241350 N 0.000
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N 0.000
Aquca_030_00325 Aquilegia coerulea Aquca_030_00325 N 0.000
AT1G31040 Arabidopsis thaliana AT1G31040 N 0.000
BGIOSGA007635 Oryza indica BGIOSGA007635 N 0.000
BGIOSGA023427 Oryza indica BGIOSGA023427 N 0.000
Bo2g121040 Brassica oleracea Bo2g121040 N 0.000
Bo7g041160 Brassica oleracea Bo7g041160 N 0.000
Bostr.15697s0409 Boechera stricta Bostr.15697s0409 N 0.000
Bra014899 Brassica rapa Bra014899 N 0.000
Bra038403 Brassica rapa Bra038403 N 0.000
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N 0.000
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N 0.000
Cagra.1508s0089 Capsella grandiflora Cagra.1508s0089 N 0.000
Carubv10011663m.g Capsella rubella Carubv10011663m.g N 0.000
cassava11490.m1 Manihot esculenta cassava11490.m1 N 0.000
cassava17724.valid.m1 Manihot esculenta cassava17724.valid.m1 N 0.000
chr6.CM0037.1230.nd Lotus japonicus chr6.CM0037.1230.nd N 0.000
Ciclev10016385m.g Citrus clementina Ciclev10016385m.g N 0.000
Cla010042 Citrullus lanatus Cla010042 N 0.000
Cla019628 Citrullus lanatus Cla019628 N 0.000
Cucsa.048750 Cucumis sativus Cucsa.048750 N 0.000
Cucsa.134530 Cucumis sativus Cucsa.134530 N 0.000
Eucgr.D00032 Eucalyptus grandis Eucgr.D00032 N 0.000
Eucgr.E00457 Eucalyptus grandis Eucgr.E00457 N 0.000
Eucgr.E04309 Eucalyptus grandis Eucgr.E04309 N 0.000
evm.TU.supercontig_29.132 Carica papaya evm.TU.supercontig_29.132 N 0.000
evm.TU.supercontig_30.133 Carica papaya evm.TU.supercontig_30.133 N 0.000
F775_02274 Aegilops tauschii F775_02274 N 0.000
fgenesh1_pm.C_scaffold_1002523 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002523 N 0.000
gene19989-v1.0-hybrid Fragaria vesca gene19989-v1.0-hybrid N 0.000
GLYMA01G17580 Glycine max GLYMA01G17580 N 0.000
GLYMA05G26271 Glycine max GLYMA05G26271 N 0.000
GLYMA08G09191 Glycine max GLYMA08G09191 N 0.000
GLYMA09G05781 Glycine max GLYMA09G05781 N 0.000
GLYMA09G12330 Glycine max GLYMA09G12330 N 0.000
GLYMA11G17770 Glycine max GLYMA11G17770 N 0.000
GLYMA15G17040 Glycine max GLYMA15G17040 N 0.000
GLYMA15G23920 Glycine max GLYMA15G23920 N 0.000
Gorai.008G237000 Gossypium raimondii Gorai.008G237000 N 0.000
GRMZM2G017882 Zea mays GRMZM2G017882 N 0.000
GSMUA_Achr11G04210_001 Musa acuminata GSMUA_Achr11G04210_001 N 0.000
GSMUA_Achr2G02580_001 Musa acuminata GSMUA_Achr2G02580_001 N 0.000
GSMUA_Achr6G20140_001 Musa acuminata GSMUA_Achr6G20140_001 N 0.000
GSMUA_Achr7G03600_001 Musa acuminata GSMUA_Achr7G03600_001 N 0.000
GSMUA_Achr8G33510_001 Musa acuminata GSMUA_Achr8G33510_001 N 0.000
GSMUA_Achr9G22490_001 Musa acuminata GSMUA_Achr9G22490_001 N 0.000
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N 0.000
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N 0.000
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N 0.000
LPERR02G04770 Leersia perrieri LPERR02G04770 N 0.000
LPERR06G19930 Leersia perrieri LPERR06G19930 N 0.000
Lus10036226.g Linum usitatissimum Lus10036226.g N 0.000
Lus10038365.g Linum usitatissimum Lus10038365.g N 0.000
MDP0000197021 Malus domestica MDP0000197021 N 0.000
MDP0000891068 Malus domestica MDP0000891068 N 0.000
mgf021599m Mimulus guttatus mgf021599m N 0.000
MLOC_21744 Hordeum vulgare MLOC_21744 N 0.000
MTR_2g036170 Medicago truncatula MTR_2g036170 N 0.000
MTR_4g094680 Medicago truncatula MTR_4g094680 N 0.000
OB02G14750 Oryza brachyantha OB02G14750 N 0.000
OBART02G05520 Oryza barthii OBART02G05520 N 0.000
OBART06G24000 Oryza barthii OBART06G24000 N 0.000
OGLUM02G05380 Oryza glumaepatula OGLUM02G05380 N 0.000
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N 0.000
OLONG_011712 Oryza longistaminata OLONG_011712 N 0.000
OLONG_022199 Oryza longistaminata OLONG_022199 N 0.000
OMERI06G23930 Oryza meridionalis OMERI06G23930 N 0.000
ONIVA02G05860 Oryza nivara ONIVA02G05860 N 0.000
ONIVA03G43780 Oryza nivara ONIVA03G43780 N 0.000
OPUNC02G04680 Oryza punctata OPUNC02G04680 N 0.000
OPUNC06G21750 Oryza punctata OPUNC06G21750 N 0.000
orange1.1g048158m.g Citrus sinensis orange1.1g048158m.g N 0.000
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N 0.000
ORUFI02G05620 Oryza rufipogon ORUFI02G05620 N 0.000
OS02G0172800 Oryza sativa OS02G0172800 N 0.000
OS06G0666100 Oryza sativa OS06G0666100 N 0.000
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N 0.000
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N 0.000
Pavir.Ab00641 Panicum virgatum Pavir.Ab00641 N 0.000
Pavir.Da00255 Panicum virgatum Pavir.Da00255 N 0.000
Pavir.Db00476 Panicum virgatum Pavir.Db00476 N 0.000
Pavir.J35161 Panicum virgatum Pavir.J35161 N 0.000
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N 0.000
PK04104.1 Cannabis sativa PK04104.1 N 0.000
Pm010795 Prunus mume Pm010795 N 0.000
Pm017841 Prunus mume Pm017841 N 0.000
POPTR_0001s15920 Populus trichocarpa POPTR_0001s15920 N 0.000
POPTR_0003s07310 Populus trichocarpa POPTR_0003s07310 N 0.000
PRUPE_ppa023785mg Prunus persica PRUPE_ppa023785mg N 0.000
PRUPE_ppa024886mg Prunus persica PRUPE_ppa024886mg N 0.000
SapurV1A.0104s0310 Salix purpurea SapurV1A.0104s0310 N 0.000
SapurV1A.0210s0200 Salix purpurea SapurV1A.0210s0200 N 0.000
SapurV1A.2696s0020 Salix purpurea SapurV1A.2696s0020 N 0.000
Sb04g004830 Sorghum bicolor Sb04g004830 N 0.000
Sb10g026620 Sorghum bicolor Sb10g026620 N 0.000
Si007394m.g Setaria italica Si007394m.g N 0.000
Si018139m.g Setaria italica Si018139m.g N 0.000
Solyc02g068510.1 Solanum lycopersicum Solyc02g068510.1 N 0.000
Solyc07g007320.1 Solanum lycopersicum Solyc07g007320.1 N 0.000
TCM_006017 Theobroma cacao TCM_006017 N 0.000
Thhalv10009789m.g Eutrema salsugineum Thhalv10009789m.g N 0.000
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N 0.000
Traes_6DS_CA4C01DEF Triticum aestivum Traes_6DS_CA4C01DEF N 0.000
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N 0.000
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N 0.000
TRIUR3_32978 Triticum urartu TRIUR3_32978 N 0.000
TRIUR3_33737 Triticum urartu TRIUR3_33737 N 0.000
VIT_01s0011g01410 Vitis vinifera VIT_01s0011g01410 N 0.000
VIT_15s0048g00580 Vitis vinifera VIT_15s0048g00580 N 0.000