CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SHR
(
Arabidopsis lyrata
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
scaffold_700314.1
T201393_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_700314.1
GRAS
143
529
ADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDIKPDEVLAINCVGAMHGIAPRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSDSTERRETARKWSRRMRNGGFGAVGYSDEVADDVRALLRRYKEGVWSMVQCPDAAGIFLCWRDQPVVWASAWR
Links
Other
GRAS
family TFs
Other
Arabidopsis lyrata
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SHR
Arabidopsis thaliana
AT4G37650
N
0.992
Carubv10004568m.g
Capsella rubella
Carubv10004568m.g
N
0.984
Bostr.7867s1625
Boechera stricta
Bostr.7867s1625
N
0.976
Thhalv10024885m.g
Eutrema salsugineum
Thhalv10024885m.g
N
0.959
Bo1g003500
Brassica oleracea
Bo1g003500
N
0.924
Bra011777
Brassica rapa
Bra011777
N
0.919
Bra017842
Brassica rapa
Bra017842
N
0.911
Bo7g118650
Brassica oleracea
Bo7g118650
N
0.908
Bo3g153360
Brassica oleracea
Bo3g153360
N
0.883
Bra010606
Brassica rapa
Bra010606
N
0.878
evm.TU.supercontig_6.17
Carica papaya
evm.TU.supercontig_6.17
N
0.702