CBG24578 (Caenorhabditis briggsae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CBG24578 T205595_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CBG24578
M02065_2.00
Caenorhabditis briggsae
NNNTGACAKSTN

NASMTGTCANNN
PBM
Weirauch et al.(2014)
pTH6524
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02065_2.00 Homeodomain 1 58

DNA Binding Domains

Protein ID Domain From To Sequence
CBG24578 Homeodomain 553 610

Links

Other Homeodomain family TFs
Other Caenorhabditis briggsae TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30147.m014419 Ricinus communis 30147.m014419 I 0.000
AMTR_s00016p00170610 Amborella trichopoda AMTR_s00016p00170610 I 0.000
Aquca_100_00035 Aquilegia coerulea Aquca_100_00035 I 0.000
BGIOSGA000206 Oryza indica BGIOSGA000206 I 0.000
BGIOSGA035358 Oryza indica BGIOSGA035358 I 0.000
Bo00285s440 Brassica oleracea Bo00285s440 I 0.000
Bo5g016510 Brassica oleracea Bo5g016510 I 0.000
Bo7g083870 Brassica oleracea Bo7g083870 I 0.000
Bo8g065080 Brassica oleracea Bo8g065080 I 0.000
Bo9g008020 Brassica oleracea Bo9g008020 I 0.000
Bostr.0556s0344 Boechera stricta Bostr.0556s0344 I 0.000
Bostr.13671s0164 Boechera stricta Bostr.13671s0164 I 0.000
Bra016749 Brassica rapa Bra016749 I 0.000
Bra019794 Brassica rapa Bra019794 I 0.000
Bra025226 Brassica rapa Bra025226 I 0.000
Bra032947 Brassica rapa Bra032947 I 0.000
Bra034246 Brassica rapa Bra034246 I 0.000
BRADI2G59497 Brachypodium distachyon BRADI2G59497 I 0.000
Cagra.23157s0001 Capsella grandiflora Cagra.23157s0001 I 0.000
Carubv10017099m.g Capsella rubella Carubv10017099m.g I 0.000
cassava17838.valid.m1 Manihot esculenta cassava17838.valid.m1 I 0.000
cassava37254.valid.m1 Manihot esculenta cassava37254.valid.m1 I 0.000
Ca_01394 Cicer arietinum Ca_01394 I 0.000
Ca_23892 Cicer arietinum Ca_23892 I 0.000
chr1.CM1880.50.nc Lotus japonicus chr1.CM1880.50.nc I 0.000
Ciclev10015052m.g Citrus clementina Ciclev10015052m.g I 0.000
Cla002682 Citrullus lanatus Cla002682 I 0.000
Cla003283 Citrullus lanatus Cla003283 I 0.000
Cucsa.134750 Cucumis sativus Cucsa.134750 I 0.000
Cucsa.156040 Cucumis sativus Cucsa.156040 I 0.000
estExt_fgenesh1_pg.C_300202 Physcomitrella patens estExt_fgenesh1_pg.C_300202 I 0.000
estExt_Genewise1.C_510113 Physcomitrella patens estExt_Genewise1.C_510113 I 0.000
Eucgr.G01938 Eucalyptus grandis Eucgr.G01938 I 0.000
evm.TU.supercontig_69.52 Carica papaya evm.TU.supercontig_69.52 N 0.000
evm.TU.supercontig_70.77 Carica papaya evm.TU.supercontig_70.77 I 0.000
F775_14780 Aegilops tauschii F775_14780 I 0.000
gene06435-v1.0-hybrid Fragaria vesca gene06435-v1.0-hybrid I 0.000
GLYMA04G37750 Glycine max GLYMA04G37750 I 0.000
GLYMA06G17330 Glycine max GLYMA06G17330 I 0.000
GLYMA16G05390 Glycine max GLYMA16G05390 I 0.000
GLYMA19G27483 Glycine max GLYMA19G27483 I 0.000
Gorai.001G275600 Gossypium raimondii Gorai.001G275600 I 0.000
Gorai.007G044800 Gossypium raimondii Gorai.007G044800 I 0.000
Gorai.007G072600 Gossypium raimondii Gorai.007G072600 I 0.000
GRMZM2G033356 Zea mays GRMZM2G033356 I 0.000
GRMZM2G172297 Zea mays GRMZM2G172297 I 0.000
GRMZM2G173534 Zea mays GRMZM2G173534 I 0.000
GSMUA_Achr10G12060_001 Musa acuminata GSMUA_Achr10G12060_001 I 0.000
GSMUA_Achr10G18380_001 Musa acuminata GSMUA_Achr10G18380_001 I 0.000
GSMUA_Achr11G09640_001 Musa acuminata GSMUA_Achr11G09640_001 I 0.000
GSMUA_Achr6G08070_001 Musa acuminata GSMUA_Achr6G08070_001 I 0.000
gw1.257.54.1 Physcomitrella patens gw1.257.54.1 I 0.000
ICE1 Arabidopsis lyrata fgenesh2_kg.5__441__AT3G26744.2 I 0.000
LjSGA_024382.1 Lotus japonicus LjSGA_024382.1 I 0.000
LPERR01G37160 Leersia perrieri LPERR01G37160 I 0.000
LPERR11G11940 Leersia perrieri LPERR11G11940 I 0.000
MDP0000219146 Malus domestica MDP0000219146 I 0.000
MDP0000247912 Malus domestica MDP0000247912 I 0.000
MDP0000304669 Malus domestica MDP0000304669 I 0.000
MDP0000662999 Malus domestica MDP0000662999 I 0.000
MDP0000790939 Malus domestica MDP0000790939 N 0.000
mgf012194m Mimulus guttatus mgf012194m I 0.000
mgf015974m Mimulus guttatus mgf015974m I 0.000
mgf016462m Mimulus guttatus mgf016462m I 0.000
MLOC_46407 Hordeum vulgare MLOC_46407 I 0.000
MLOC_76805 Hordeum vulgare MLOC_76805 I 0.000
MTR_3g498695 Medicago truncatula MTR_3g498695 I 0.000
MTR_7g083900 Medicago truncatula MTR_7g083900 I 0.000
OBART01G42600 Oryza barthii OBART01G42600 I 0.000
OBART11G15260 Oryza barthii OBART11G15260 I 0.000
OGLUM01G46870 Oryza glumaepatula OGLUM01G46870 I 0.000
OGLUM11G14700 Oryza glumaepatula OGLUM11G14700 I 0.000
OMERI01G39590 Oryza meridionalis OMERI01G39590 I 0.000
OMERI11G12580 Oryza meridionalis OMERI11G12580 I 0.000
ONIVA01G48650 Oryza nivara ONIVA01G48650 I 0.000
ONIVA12G10770 Oryza nivara ONIVA12G10770 I 0.000
OPUNC01G41620 Oryza punctata OPUNC01G41620 I 0.000
OPUNC11G12640 Oryza punctata OPUNC11G12640 I 0.000
orange1.1g011370m.g Citrus sinensis orange1.1g011370m.g I 0.000
orange1.1g041101m.g Citrus sinensis orange1.1g041101m.g I 0.000
orange1.1g047004m.g Citrus sinensis orange1.1g047004m.g I 0.000
ORGLA01G0363500 Oryza glaberrima ORGLA01G0363500 I 0.000
ORGLA11G0129200 Oryza glaberrima ORGLA11G0129200 I 0.000
ORUFI01G46010 Oryza rufipogon ORUFI01G46010 I 0.000
ORUFI11G16280 Oryza rufipogon ORUFI11G16280 I 0.000
OS01G0928000 Oryza sativa OS01G0928000 I 0.000
OS11G0523700 Oryza sativa OS11G0523700 I 0.000
Pavir.Ea03858 Panicum virgatum Pavir.Ea03858 I 0.000
Pavir.Eb03736 Panicum virgatum Pavir.Eb03736 I 0.000
Pavir.Ha01426 Panicum virgatum Pavir.Ha01426 I 0.000
Pavir.Hb00982 Panicum virgatum Pavir.Hb00982 I 0.000
PK06940.1 Cannabis sativa PK06940.1 I 0.000
Pm016093 Prunus mume Pm016093 I 0.000
Pm024587 Prunus mume Pm024587 I 0.000
POPTR_0012s10780 Populus trichocarpa POPTR_0012s10780 I 0.000
POPTR_0015s11650 Populus trichocarpa POPTR_0015s11650 I 0.000
PRUPE_ppa002978mg Prunus persica PRUPE_ppa002978mg I 0.000
PRUPE_ppa005038mg Prunus persica PRUPE_ppa005038mg I 0.000
PRUPE_ppa018220mg Prunus persica PRUPE_ppa018220mg I 0.000
SapurV1A.0517s0250 Salix purpurea SapurV1A.0517s0250 I 0.000
SapurV1A.0672s0200 Salix purpurea SapurV1A.0672s0200 I 0.000
SapurV1A.0774s0030 Salix purpurea SapurV1A.0774s0030 I 0.000
Sb03g044660 Sorghum bicolor Sb03g044660 I 0.000
Sb05g019530 Sorghum bicolor Sb05g019530 I 0.000
SCRM Arabidopsis thaliana AT3G26744 D 0.000
SCRM2 Arabidopsis lyrata Al_scaffold_0001_1326 I 0.000
SCRM2 Arabidopsis thaliana AT1G12860 I 0.000
SELMODRAFT_119431 Selaginella moellendorffii SELMODRAFT_119431 I 0.000
SELMODRAFT_138758 Selaginella moellendorffii SELMODRAFT_138758 I 0.000
SELMODRAFT_75047 Selaginella moellendorffii SELMODRAFT_75047 I 0.000
SELMODRAFT_91237 Selaginella moellendorffii SELMODRAFT_91237 I 0.000
SELMODRAFT_94010 Selaginella moellendorffii SELMODRAFT_94010 I 0.000
Si001874m.g Setaria italica Si001874m.g I 0.000
Si026212m.g Setaria italica Si026212m.g I 0.000
Solyc03g118310.2 Solanum lycopersicum Solyc03g118310.2 I 0.000
TCM_014741 Theobroma cacao TCM_014741 I 0.000
TCM_017336 Theobroma cacao TCM_017336 I 0.000
Thhalv10004059m.g Eutrema salsugineum Thhalv10004059m.g I 0.000
Thhalv10007566m.g Eutrema salsugineum Thhalv10007566m.g I 0.000
TRAES3BF001100060CFD_g Triticum aestivum TRAES3BF001100060CFD_g I 0.000
Traes_7AL_ACAC47D88 Triticum aestivum Traes_7AL_ACAC47D88 I 0.000
Traes_7BL_BF5300D88 Triticum aestivum Traes_7BL_BF5300D88 I 0.000
Traes_7DL_2A7EF919F Triticum aestivum Traes_7DL_2A7EF919F I 0.000
TRIUR3_17003 Triticum urartu TRIUR3_17003 I 0.000
VIT_01s0244g00130 Vitis vinifera VIT_01s0244g00130 I 0.000
VIT_14s0068g01200 Vitis vinifera VIT_14s0068g01200 I 0.000
VIT_17s0000g00330 Vitis vinifera VIT_17s0000g00330 I 0.000