CJA22683 (Caenorhabditis japonica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CJA22683 T205988_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxc12
M00508_2.00 		Mus musculus
NDTWAYNDBN
NVHNRTWAHN		 PBM
Berger et al.(2008)
Hoxc12_3480 		0.610 0.386
HOXC12
M03135_2.00 		Homo sapiens
TTTTATTRY
RYAATAAAA		 SELEX
Jolma et al.(2013)
HOXC12_1 		0.610 0.386
HOXC12
M03136_2.00 		Homo sapiens
RRTCGTAAAAH
DTTTTACGAYY		 SELEX
Jolma et al.(2013)
HOXC12_2 		0.610 0.386
HOXC12
M05083_2.00 		Homo sapiens
NGYAATAAAAN
NTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_1 		0.610 0.386
HOXC12
M05084_2.00 		Homo sapiens
VRTCGTAAAHN
NDTTTACGAYB		 SELEX
Yin et al.(2017)
HOXC12_eDBD_HT-SELEX_2 		0.610 0.386
HOXC12
M05085_2.00 		Homo sapiens
NGYAATAAAAH
DTTTTATTRCN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_1 		0.610 0.386
HOXC12
M05086_2.00 		Homo sapiens
NRTCGTAAAHH
DDTTTACGAYN		 SELEX
Yin et al.(2017)
HOXC12_eDBD_Methyl-HT-SELEX_2 		0.610 0.386
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CJA22683 Homeodomain 158 214

Links

Other Homeodomain family TFs
Other Caenorhabditis japonica TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HelroG127763 Helobdella robusta HelroG127763 I 0.626
ENSPSIG00000004903 Pelodiscus sinensis ENSPSIG00000004903 I 0.610
ENSPPYG00000004589 Pongo abelii ENSPPYG00000004589 I 0.610
HOXC12 Pan troglodytes ENSPTRG00000005026 I 0.610
HOXC12 Pteropus vampyrus ENSPVAG00000012297 I 0.610
HOXC12 Sus scrofa ENSSSCG00000000281 I 0.610
Hoxc12 Rattus norvegicus ENSRNOG00000016116 I 0.610
ENSPFOG00000013995 Poecilia formosa ENSPFOG00000013995 I 0.610
ENSPFOG00000002075 Poecilia formosa ENSPFOG00000002075 I 0.610
ENSONIG00000008617 Oreochromis niloticus ENSONIG00000008617 I 0.610
HOXC12 Otolemur garnettii ENSOGAG00000025383 I 0.610
ENSONIG00000012233 Oreochromis niloticus ENSONIG00000012233 I 0.610
hoxc12a Oryzias latipes ENSORLG00000007902 I 0.610
ENSPANG00000010379 Papio anubis ENSPANG00000010379 I 0.610
hoxd12a Oryzias latipes ENSORLG00000017536 I 0.610
ENSSTOG00000019478 Ictidomys tridecemlineatus ENSSTOG00000019478 I 0.610
hoxc12a Tetraodon nigroviridis ENSTNIG00000001773 I 0.610
ENSP00000243103-D1 Bos grunniens ENSP00000243103-D1 I 0.610
Brh_R005179 Buceros rhinoceros Brh_R005179 I 0.610
ENSP00000243103 Macaca fascicularis ENSP00000243103 I 0.610
Ogr02756 Ophisaurus gracilis Ogr02756 I 0.610
hoxc12 Xenopus tropicalis XB-GENE-853677 I 0.610
Tal_R008153 Tyto alba Tal_R008153 I 0.610
Afo_R003393 Aptenodytes forsteri Afo_R003393 I 0.610
Aan_R014659 Calypte anna Aan_R014659 I 0.610
hoxc12a Takifugu rubripes ENSTRUG00000004280 I 0.610
hoxd12a Tetraodon nigroviridis ENSTNIG00000001777 I 0.610
hoxd12a Takifugu rubripes ENSTRUG00000017534 I 0.610
HOXC12 Tursiops truncatus ENSTTRG00000004543 I 0.610
ENSXMAG00000000425 Xiphophorus maculatus ENSXMAG00000000425 I 0.610
HOXC12 Oryctolagus cuniculus ENSOCUG00000001157 I 0.610
ENSOARG00000016352 Ovis aries ENSOARG00000016352 I 0.610
ENSCSAG00000005459 Chlorocebus sabaeus ENSCSAG00000005459 I 0.610
HOXC12 Cavia porcellus ENSCPOG00000026314 I 0.610
hoxd12a Danio rerio ENSDARG00000059263 I 0.610
hoxc12a Danio rerio ENSDARG00000070352 I 0.610
HOXC12 Equus caballus ENSECAG00000024893 I 0.610
hoxc12b Danio rerio ENSDARG00000103133 I 0.610
HOXC12 Callithrix jacchus ENSCJAG00000018806 I 0.610
HOXC12 Canis familiaris ENSCAFG00000006645 I 0.610
ENSAMXG00000006895 Astyanax mexicanus ENSAMXG00000006895 I 0.610
ENSAMEG00000000665 Ailuropoda melanoleuca ENSAMEG00000000665 I 0.610
ENSAMXG00000009358 Astyanax mexicanus ENSAMXG00000009358 I 0.610
ENSAMXG00000024684 Astyanax mexicanus ENSAMXG00000024684 I 0.610
HOXC12 Bos taurus ENSBTAG00000000924 I 0.610
ENSAPLG00000007306 Anas platyrhynchos ENSAPLG00000007306 I 0.610
HOXC12 Felis catus ENSFCAG00000023389 I 0.610
HOXC12 Homo sapiens ENSG00000123407 D 0.610
HOXC12 Macaca mulatta ENSMMUG00000004541 I 0.610
HOXC12 Myotis lucifugus ENSMLUG00000026984 I 0.610
ENSMPUG00000005886 Mustela putorius furo ENSMPUG00000005886 I 0.610
Hoxc12 Mus musculus ENSMUSG00000050328 D 0.610
ENSOANG00000015091 Ornithorhynchus anatinus ENSOANG00000015091 I 0.610
ENSNLEG00000017683 Nomascus leucogenys ENSNLEG00000017683 I 0.610
HOXC12 Microcebus murinus ENSMICG00000011709 I 0.610
ENSLOCG00000006304 Lepisosteus oculatus ENSLOCG00000006304 I 0.610
ENSGALG00000026393 Gallus gallus ENSGALG00000026393 I 0.610
hoxd12a Gasterosteus aculeatus ENSGACG00000004574 I 0.610
HOXC12 Gorilla gorilla ENSGGOG00000023684 I 0.610
ENSGMOG00000004313 Gadus morhua ENSGMOG00000004313 I 0.610
HOXC12 Loxodonta africana ENSLAFG00000024750 I 0.610
ENSLACG00000016761 Latimeria chalumnae ENSLACG00000016761 I 0.610
ENSACAG00000010840 Anolis carolinensis ENSACAG00000010840 I 0.610
SMU15039372 Schmidtea mediterranea SMU15039372 I 0.609