hex (Ciona intestinalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCING00000001270 T207812_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pha-2
M02184_2.00 		Caenorhabditis elegans
NNNATNDNNN
NNNHNATNNN		 PBM
Weirauch et al.(2014)
pTH6423 		0.709 0.807
HHEX
M06541_2.00 		Drosophila melanogaster
WYBAATWA
TWATTVRW		 B1H
Mathelier et al.(2014)
MA0183.1 		0.683 0.667
HHEX
M06358_2.00 		Drosophila melanogaster
WYBAATWA
TWATTVRW		 B1H
Zhu et al.(2011)
CG7056_Cell_FBgn0038852 		0.683 0.667
HHEX
M06359_2.00 		Drosophila melanogaster
NYBAATWR
YWATTVRN		 B1H
Zhu et al.(2011)
CG7056_SOLEXA_FBgn0038852 		0.683 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000002464 Homeodomain 264 320

Links

Other Homeodomain family TFs
Other Ciona intestinalis TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAVG00000001801 Ciona savignyi ENSCSAVG00000001801 I 0.867
CGI_10025054 Crassostrea gigas CGI_10025054 I 0.860
HHEX Pan troglodytes ENSPTRG00000002760 I 0.848
ENSPSIG00000015884 Pelodiscus sinensis ENSPSIG00000015884 I 0.848
ENSPPYG00000002486 Pongo abelii ENSPPYG00000002486 I 0.848
HHEX Pteropus vampyrus ENSPVAG00000007094 I 0.848
Hhex Rattus norvegicus ENSRNOG00000016595 I 0.848
ENSSSCG00000010472 Sus scrofa ENSSSCG00000010472 I 0.848
ENSMLUG00000024763 Myotis lucifugus ENSMLUG00000024763 I 0.848
ENSSHAG00000018185 Sarcophilus harrisii ENSSHAG00000018185 I 0.848
ENSPFOG00000009869 Poecilia formosa ENSPFOG00000009869 I 0.848
ENSPANG00000021555 Papio anubis ENSPANG00000021555 I 0.848
Hhex Mus musculus ENSMUSG00000024986 I 0.848
ENSMPUG00000017219 Mustela putorius furo ENSMPUG00000017219 I 0.848
HHEX Monodelphis domestica ENSMODG00000006444 I 0.848
HHEX Oryctolagus cuniculus ENSOCUG00000016719 I 0.848
HHEX Otolemur garnettii ENSOGAG00000015201 I 0.848
ENSSTOG00000006255 Ictidomys tridecemlineatus ENSSTOG00000006255 I 0.848
HHEX Ochotona princeps ENSOPRG00000003896 I 0.848
ENSONIG00000007247 Oreochromis niloticus ENSONIG00000007247 I 0.848
HHEX Macaca mulatta ENSMMUG00000011789 I 0.848
ENSTGUG00000008924 Taeniopygia guttata ENSTGUG00000008924 I 0.848
Pvit_14369 Pogona vitticeps Pvit_14369 I 0.848
Ogr00908 Ophisaurus gracilis Ogr00908 I 0.848
Myotis_brandtii_KIF11_10018005 Myotis brandtii Myotis_brandtii_KIF11_10018005 I 0.848
ENSP00000282728 Macaca fascicularis ENSP00000282728 I 0.848
e_gw.54.243.1 Branchiostoma floridae e_gw.54.243.1 I 0.848
e_gw.56.215.1 Branchiostoma floridae e_gw.56.215.1 I 0.848
hhex.L Xenopus laevis XB-GENE-865680 I 0.848
hhex Xenopus tropicalis XB-GENE-487159 I 0.848
Sakowv30040087m.g Saccoglossus kowalevskii Sakowv30040087m.g I 0.848
ENSBTAP00000018899-D1 Bos grunniens ENSBTAP00000018899-D1 I 0.848
Cmyd_10016939 Chelonia mydas Cmyd_10016939 I 0.848
HHEX Tetraodon nigroviridis ENSTNIG00000005879 I 0.848
ENSTGUG00000013882 Taeniopygia guttata ENSTGUG00000013882 I 0.848
ENSMLUG00000013333 Myotis lucifugus ENSMLUG00000013333 I 0.848
HHEX Takifugu rubripes ENSTRUG00000004234 I 0.848
HHEX Vicugna pacos ENSVPAG00000009916 I 0.848
Alligator_sinensis_CCG013675.1 Alligator sinensis Alligator_sinensis_CCG013675.1 I 0.848
Afo_R002655 Aptenodytes forsteri Afo_R002655 I 0.848
SPU_027215 Strongylocentrotus purpuratus SPU_027215 I 0.848
ENSTBEG00000001339 Tupaia belangeri ENSTBEG00000001339 I 0.848
HHEX Tursiops truncatus ENSTTRG00000012365 I 0.848
ENSCSAG00000006543 Chlorocebus sabaeus ENSCSAG00000006543 I 0.848
ENSCPOG00000021993 Cavia porcellus ENSCPOG00000021993 I 0.848
ENSMGAG00000009052 Meleagris gallopavo ENSMGAG00000009052 I 0.848
HHEX Dasypus novemcinctus ENSDNOG00000041940 I 0.848
HHEX Equus caballus ENSECAG00000005199 I 0.848
HHEX Callithrix jacchus ENSCJAG00000008627 I 0.848
HHEX Choloepus hoffmanni ENSCHOG00000005837 I 0.848
ENSAMXG00000011188 Astyanax mexicanus ENSAMXG00000011188 I 0.848
ENSAPLG00000004046 Anas platyrhynchos ENSAPLG00000004046 I 0.848
HHEX Bos taurus ENSBTAG00000014217 I 0.848
HHEX Canis familiaris ENSCAFG00000007502 I 0.848
ENSFALG00000007921 Ficedula albicollis ENSFALG00000007921 I 0.848
HHEX Felis catus ENSFCAG00000023875 I 0.848
ENSLACG00000014170 Latimeria chalumnae ENSLACG00000014170 I 0.848
HHEX Anolis carolinensis ENSACAG00000006660 I 0.848
ENSLAFG00000005359 Loxodonta africana ENSLAFG00000005359 I 0.848
ENSLOCG00000007051 Lepisosteus oculatus ENSLOCG00000007051 I 0.848
ENSMEUG00000004291 Macropus eugenii ENSMEUG00000004291 I 0.848
ENSGMOG00000011697 Gadus morhua ENSGMOG00000011697 I 0.848
ENSGGOG00000027676 Gorilla gorilla ENSGGOG00000027676 I 0.848
HHEX Homo sapiens ENSG00000152804 I 0.848
ENSAMEG00000014091 Ailuropoda melanoleuca ENSAMEG00000014091 I 0.848
HHEX Gasterosteus aculeatus ENSGACG00000015385 I 0.848
ENSGGOG00000026464 Gorilla gorilla ENSGGOG00000026464 I 0.848
ENSGALG00000029169 Gallus gallus ENSGALG00000029169 I 0.848
LotgiG128951 Lottia gigantea LotgiG128951 I 0.846
NEMVEDRAFT_v1g39891 Nematostella vectensis NEMVEDRAFT_v1g39891 I 0.845
SMAR000779 Strigamia maritima SMAR000779 I 0.845
ENSPMAG00000009445 Petromyzon marinus ENSPMAG00000009445 I 0.844
BGIBMGA010054 Bombyx mori BGIBMGA010054 I 0.834
ENSLACG00000009588 Latimeria chalumnae ENSLACG00000009588 I 0.832
TC004555 Tribolium castaneum TC004555 I 0.822
ACOM034050 Anopheles coluzzii ACOM034050 I 0.822
ACUA024331 Anopheles culicifacies ACUA024331 I 0.822
ADIR002846 Anopheles dirus ADIR002846 I 0.822
ACHR001525 Anopheles christyi ACHR001525 I 0.822
AARA001840 Anopheles arabiensis AARA001840 I 0.822
CPIJ003318 Culex quinquefasciatus CPIJ003318 I 0.822
AGAP001389 Anopheles gambiae AGAP001389 I 0.822
AAEL004707 Aedes aegypti AAEL004707 I 0.822
AEPI001110 Anopheles epiroticus AEPI001110 I 0.822
AATE006277 Anopheles atroparvus AATE006277 I 0.822
AFAF018650 Anopheles farauti AFAF018650 I 0.822
AMIN000568 Anopheles minimus AMIN000568 I 0.822
AMEM017315 Anopheles merus AMEM017315 I 0.822
AQUA006568 Anopheles quadriannulatus AQUA006568 I 0.822
ASIS014034 Anopheles sinensis ASIS014034 I 0.822
LLOJ007496 Lutzomyia longipalpis LLOJ007496 I 0.822
ASTEI07538 Anopheles stephensi ASTEI07538 I 0.822
CpipJ_CPIJ003318 Culex pipiens CpipJ_CPIJ003318 I 0.822
AMEC012825 Anopheles melas AMEC012825 I 0.822
KGM_13906 Danaus plexippus KGM_13906 I 0.822
L798_02156 Zootermopsis nevadensis L798_02156 I 0.822
HMEL004646 Heliconius melpomene HMEL004646 I 0.822
AFUN007808 Anopheles funestus AFUN007808 I 0.822
AMAM015319 Anopheles maculatus AMAM015319 I 0.822
CapteG129537 Capitella teleta CapteG129537 I 0.804
CapteG110019 Capitella teleta CapteG110019 I 0.804
L898_g1404 Steinernema monticolum L898_g1404 I 0.711
L889_g29725 Steinernema feltiae L889_g29725 I 0.711
L892_g7017 Steinernema scapterisci L892_g7017 I 0.711
L596_g25649 Steinernema carpocapsae L596_g25649 I 0.711
CBG08137 Caenorhabditis briggsae CBG08137 I 0.709
SVE_1799000 Strongyloides venezuelensis SVE_1799000 I 0.709
SPAL_0000841600 Strongyloides papillosus SPAL_0000841600 I 0.709
HPLM_0000551901 Haemonchus placei HPLM_0000551901 I 0.709
HCOI01904700 Haemonchus contortus HCOI01904700 I 0.709
PTRK_0000720600 Parastrongyloides trichosuri PTRK_0000720600 I 0.709
NBR_0000887601 Nippostrongylus brasiliensis NBR_0000887601 I 0.709
SSTP_0000145800 Strongyloides stercoralis SSTP_0000145800 I 0.709
CBN29205 Caenorhabditis brenneri CBN29205 I 0.709
CRE17126 Caenorhabditis remanei CRE17126 I 0.709
TELCIR_00798 Teladorsagia circumcincta TELCIR_00798 I 0.709
pha-2 Caenorhabditis elegans WBGene00004011 D 0.709
ACOC_0000843601 Angiostrongylus costaricensis ACOC_0000843601 I 0.708
ASU_02199 Ascaris suum ASU_02199 I 0.708
nRc.2.0.1.g06585 Romanomermis culicivorax nRc.2.0.1.g06585 I 0.704
OFLC_0000354301 Onchocerca flexuosa OFLC_0000354301 I 0.701
BXY_0632900 Bursaphelenchus xylophilus BXY_0632900 I 0.701
nAv.1.0.1.g00022 Acanthocheilonema viteae nAv.1.0.1.g00022 I 0.701
WBGene00240685 Onchocerca volvulus WBGene00240685 I 0.701
LOAG_11830 Loa loa LOAG_11830 I 0.701
nOo.2.0.1.g09114 Onchocerca ochengi nOo.2.0.1.g09114 I 0.701
nDi.2.2.2.g05290 Dirofilaria immitis nDi.2.2.2.g05290 I 0.701
nLs.2.1.2.g00270 Litomosoides sigmodontis nLs.2.1.2.g00270 I 0.700
DME_0000899101 Dracunculus medinensis DME_0000899101 I 0.700
Bm5107 Brugia malayi Bm5107 I 0.700
BTMF_0001400701 Brugia timori BTMF_0001400701 I 0.700
WUBG_10995 Wuchereria bancrofti WUBG_10995 I 0.700
TriadG9560 Trichoplax adhaerens TriadG9560 I 0.698
GPLIN_000004000 Globodera pallida GPLIN_000004000 I 0.698
TCLT_0000379201 Thelazia callipaeda TCLT_0000379201 I 0.694
RSKR_0000094800 Rhabditophanes kr3021 RSKR_0000094800 I 0.688
ASIM_0001155801 Anisakis simplex ASIM_0001155801 I 0.687
GD20010 Drosophila simulans FBgn0191493 I 0.683
GH19308 Drosophila grimshawi FBgn0126773 I 0.683
GI23524 Drosophila mojavensis FBgn0146250 I 0.683
GG14915 Drosophila erecta FBgn0107169 I 0.683
GF18520 Drosophila ananassae FBgn0095538 I 0.683
HHEX Drosophila melanogaster FBgn0038852 D 0.683
GA20065 Drosophila pseudoobscura FBgn0080061 I 0.683
GM15106 Drosophila sechellia FBgn0170026 I 0.683
GL12681 Drosophila persimilis FBgn0150287 I 0.683
GJ10276 Drosophila virilis FBgn0197562 I 0.683
MESCA008304 Megaselia scalaris MESCA008304 I 0.683
LCUP007736 Lucilia cuprina LCUP007736 I 0.683
GK13080 Drosophila willistoni FBgn0215089 I 0.683
MhA1_Contig193.frz3.gene1 Meloidogyne hapla MhA1_Contig193.frz3.gene1 I 0.677
tetur29g00560 Tetranychus urticae tetur29g00560 I 0.673
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0 I 0.672
scaffold24-EXSNAP2012.65 Pristionchus exspectatus scaffold24-EXSNAP2012.65 I 0.662
HelroG80789 Helobdella robusta HelroG80789 I 0.656
DAPPUDRAFT_229438 Daphnia pulex DAPPUDRAFT_229438 I 0.654
CABZ01079847.1 Danio rerio ENSDARG00000098231 I 0.617