CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw.54.243.1
(
Branchiostoma floridae
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
e_gw.54.243.1
T227310_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pha-2
M02184_2.00
Caenorhabditis elegans
NNNATNDNNN
NNNHNATNNN
PBM
Weirauch et al.(2014)
pTH6423
0.724
0.789
HHEX
M06541_2.00
Drosophila melanogaster
WYBAATWA
TWATTVRW
B1H
Mathelier et al.(2014)
MA0183.1
0.688
0.702
HHEX
M06358_2.00
Drosophila melanogaster
WYBAATWA
TWATTVRW
B1H
Zhu et al.(2011)
CG7056_Cell_FBgn0038852
0.688
0.702
HHEX
M06359_2.00
Drosophila melanogaster
NYBAATWR
YWATTVRN
B1H
Zhu et al.(2011)
CG7056_SOLEXA_FBgn0038852
0.688
0.702
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.54.243.1
Homeodomain
142
198
KGGQVRFSNDQTLELEKKFESQKYLSPPERKRLAKSLQLTERQVKTWFQNRRAKWRR
Links
Other
Homeodomain
family TFs
Other
Branchiostoma floridae
TFs
157 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
e_gw.56.215.1
Branchiostoma floridae
e_gw.56.215.1
I
0.867
Sakowv30040087m.g
Saccoglossus kowalevskii
Sakowv30040087m.g
I
0.861
CGI_10025054
Crassostrea gigas
CGI_10025054
I
0.853
LotgiG128951
Lottia gigantea
LotgiG128951
I
0.853
Pvit_14369
Pogona vitticeps
Pvit_14369
I
0.850
ENSPFOG00000009869
Poecilia formosa
ENSPFOG00000009869
I
0.849
ENSPPYG00000002486
Pongo abelii
ENSPPYG00000002486
I
0.849
ENSPANG00000021555
Papio anubis
ENSPANG00000021555
I
0.849
HHEX
Pan troglodytes
ENSPTRG00000002760
I
0.849
Hhex
Rattus norvegicus
ENSRNOG00000016595
I
0.849
HHEX
Pteropus vampyrus
ENSPVAG00000007094
I
0.849
HHEX
Ochotona princeps
ENSOPRG00000003896
I
0.849
ENSPSIG00000015884
Pelodiscus sinensis
ENSPSIG00000015884
I
0.849
HHEX
Oryctolagus cuniculus
ENSOCUG00000016719
I
0.849
HHEX
Macaca mulatta
ENSMMUG00000011789
I
0.849
ENSMLUG00000024763
Myotis lucifugus
ENSMLUG00000024763
I
0.849
ENSMLUG00000013333
Myotis lucifugus
ENSMLUG00000013333
I
0.849
HHEX
Monodelphis domestica
ENSMODG00000006444
I
0.849
ENSMPUG00000017219
Mustela putorius furo
ENSMPUG00000017219
I
0.849
HHEX
Otolemur garnettii
ENSOGAG00000015201
I
0.849
ENSSHAG00000018185
Sarcophilus harrisii
ENSSHAG00000018185
I
0.849
Hhex
Mus musculus
ENSMUSG00000024986
I
0.849
ENSONIG00000007247
Oreochromis niloticus
ENSONIG00000007247
I
0.849
ENSTGUG00000008924
Taeniopygia guttata
ENSTGUG00000008924
I
0.849
ENSBTAP00000018899-D1
Bos grunniens
ENSBTAP00000018899-D1
I
0.849
Cmyd_10016939
Chelonia mydas
Cmyd_10016939
I
0.849
Alligator_sinensis_CCG013675.1
Alligator sinensis
Alligator_sinensis_CCG013675.1
I
0.849
ENSP00000282728
Macaca fascicularis
ENSP00000282728
I
0.849
Myotis_brandtii_KIF11_10018005
Myotis brandtii
Myotis_brandtii_KIF11_10018005
I
0.849
hhex.L
Xenopus laevis
XB-GENE-865680
I
0.849
hhex
Xenopus tropicalis
XB-GENE-487159
I
0.849
Ogr00908
Ophisaurus gracilis
Ogr00908
I
0.849
Afo_R002655
Aptenodytes forsteri
Afo_R002655
I
0.849
SPU_027215
Strongylocentrotus purpuratus
SPU_027215
I
0.849
ENSMGAG00000009052
Meleagris gallopavo
ENSMGAG00000009052
I
0.849
ENSTBEG00000001339
Tupaia belangeri
ENSTBEG00000001339
I
0.849
ENSSTOG00000006255
Ictidomys tridecemlineatus
ENSSTOG00000006255
I
0.849
ENSTGUG00000013882
Taeniopygia guttata
ENSTGUG00000013882
I
0.849
HHEX
Tetraodon nigroviridis
ENSTNIG00000005879
I
0.849
HHEX
Vicugna pacos
ENSVPAG00000009916
I
0.849
HHEX
Tursiops truncatus
ENSTTRG00000012365
I
0.849
ENSSSCG00000010472
Sus scrofa
ENSSSCG00000010472
I
0.849
HHEX
Takifugu rubripes
ENSTRUG00000004234
I
0.849
ENSAMEG00000014091
Ailuropoda melanoleuca
ENSAMEG00000014091
I
0.849
ENSCSAG00000006543
Chlorocebus sabaeus
ENSCSAG00000006543
I
0.849
HHEX
Dasypus novemcinctus
ENSDNOG00000041940
I
0.849
HHEX
Equus caballus
ENSECAG00000005199
I
0.849
ENSFALG00000007921
Ficedula albicollis
ENSFALG00000007921
I
0.849
ENSCPOG00000021993
Cavia porcellus
ENSCPOG00000021993
I
0.849
HHEX
Callithrix jacchus
ENSCJAG00000008627
I
0.849
ENSAMXG00000011188
Astyanax mexicanus
ENSAMXG00000011188
I
0.849
HHEX
Bos taurus
ENSBTAG00000014217
I
0.849
HHEX
Canis familiaris
ENSCAFG00000007502
I
0.849
HHEX
Choloepus hoffmanni
ENSCHOG00000005837
I
0.849
ENSAPLG00000004046
Anas platyrhynchos
ENSAPLG00000004046
I
0.849
ENSMEUG00000004291
Macropus eugenii
ENSMEUG00000004291
I
0.849
HHEX
Anolis carolinensis
ENSACAG00000006660
I
0.849
ENSGMOG00000011697
Gadus morhua
ENSGMOG00000011697
I
0.849
ENSLACG00000014170
Latimeria chalumnae
ENSLACG00000014170
I
0.849
ENSLAFG00000005359
Loxodonta africana
ENSLAFG00000005359
I
0.849
ENSLOCG00000007051
Lepisosteus oculatus
ENSLOCG00000007051
I
0.849
HHEX
Felis catus
ENSFCAG00000023875
I
0.849
ENSGGOG00000027676
Gorilla gorilla
ENSGGOG00000027676
I
0.849
ENSGALG00000029169
Gallus gallus
ENSGALG00000029169
I
0.849
ENSGGOG00000026464
Gorilla gorilla
ENSGGOG00000026464
I
0.849
HHEX
Homo sapiens
ENSG00000152804
I
0.849
HHEX
Gasterosteus aculeatus
ENSGACG00000015385
I
0.849
ENSCSAVG00000001801
Ciona savignyi
ENSCSAVG00000001801
I
0.848
hex
Ciona intestinalis
ENSCING00000001270
I
0.848
NEMVEDRAFT_v1g39891
Nematostella vectensis
NEMVEDRAFT_v1g39891
I
0.845
ENSPMAG00000009445
Petromyzon marinus
ENSPMAG00000009445
I
0.845
SMAR000779
Strigamia maritima
SMAR000779
I
0.842
TC004555
Tribolium castaneum
TC004555
I
0.838
HMEL004646
Heliconius melpomene
HMEL004646
I
0.834
KGM_13906
Danaus plexippus
KGM_13906
I
0.834
LLOJ007496
Lutzomyia longipalpis
LLOJ007496
I
0.822
ACHR001525
Anopheles christyi
ACHR001525
I
0.822
ASTEI07538
Anopheles stephensi
ASTEI07538
I
0.822
ASIS014034
Anopheles sinensis
ASIS014034
I
0.822
ACOM034050
Anopheles coluzzii
ACOM034050
I
0.822
AATE006277
Anopheles atroparvus
AATE006277
I
0.822
AARA001840
Anopheles arabiensis
AARA001840
I
0.822
CPIJ003318
Culex quinquefasciatus
CPIJ003318
I
0.822
BGIBMGA010054
Bombyx mori
BGIBMGA010054
I
0.822
AGAP001389
Anopheles gambiae
AGAP001389
I
0.822
AAEL004707
Aedes aegypti
AAEL004707
I
0.822
AMIN000568
Anopheles minimus
AMIN000568
I
0.822
ACUA024331
Anopheles culicifacies
ACUA024331
I
0.822
AMAM015319
Anopheles maculatus
AMAM015319
I
0.822
AFUN007808
Anopheles funestus
AFUN007808
I
0.822
CpipJ_CPIJ003318
Culex pipiens
CpipJ_CPIJ003318
I
0.822
AMEC012825
Anopheles melas
AMEC012825
I
0.822
AMEM017315
Anopheles merus
AMEM017315
I
0.822
AFAF018650
Anopheles farauti
AFAF018650
I
0.822
AEPI001110
Anopheles epiroticus
AEPI001110
I
0.822
ADIR002846
Anopheles dirus
ADIR002846
I
0.822
AQUA006568
Anopheles quadriannulatus
AQUA006568
I
0.822
L798_02156
Zootermopsis nevadensis
L798_02156
I
0.822
ENSLACG00000009588
Latimeria chalumnae
ENSLACG00000009588
I
0.820
CapteG129537
Capitella teleta
CapteG129537
I
0.819
CapteG110019
Capitella teleta
CapteG110019
I
0.819
CRE17126
Caenorhabditis remanei
CRE17126
I
0.724
CBG08137
Caenorhabditis briggsae
CBG08137
I
0.724
ACOC_0000843601
Angiostrongylus costaricensis
ACOC_0000843601
I
0.724
pha-2
Caenorhabditis elegans
WBGene00004011
D
0.724
CBN29205
Caenorhabditis brenneri
CBN29205
I
0.724
NBR_0000887601
Nippostrongylus brasiliensis
NBR_0000887601
I
0.724
L898_g1404
Steinernema monticolum
L898_g1404
I
0.722
L889_g29725
Steinernema feltiae
L889_g29725
I
0.722
L892_g7017
Steinernema scapterisci
L892_g7017
I
0.722
L596_g25649
Steinernema carpocapsae
L596_g25649
I
0.722
SPAL_0000841600
Strongyloides papillosus
SPAL_0000841600
I
0.720
SVE_1799000
Strongyloides venezuelensis
SVE_1799000
I
0.720
SSTP_0000145800
Strongyloides stercoralis
SSTP_0000145800
I
0.720
HPLM_0000551901
Haemonchus placei
HPLM_0000551901
I
0.720
HCOI01904700
Haemonchus contortus
HCOI01904700
I
0.720
TELCIR_00798
Teladorsagia circumcincta
TELCIR_00798
I
0.720
PTRK_0000720600
Parastrongyloides trichosuri
PTRK_0000720600
I
0.720
OFLC_0000354301
Onchocerca flexuosa
OFLC_0000354301
I
0.716
nOo.2.0.1.g09114
Onchocerca ochengi
nOo.2.0.1.g09114
I
0.716
WBGene00240685
Onchocerca volvulus
WBGene00240685
I
0.716
BTMF_0001400701
Brugia timori
BTMF_0001400701
I
0.712
LOAG_11830
Loa loa
LOAG_11830
I
0.712
WUBG_10995
Wuchereria bancrofti
WUBG_10995
I
0.712
Bm5107
Brugia malayi
Bm5107
I
0.712
nDi.2.2.2.g05290
Dirofilaria immitis
nDi.2.2.2.g05290
I
0.712
ASU_02199
Ascaris suum
ASU_02199
I
0.708
nRc.2.0.1.g06585
Romanomermis culicivorax
nRc.2.0.1.g06585
I
0.703
DME_0000899101
Dracunculus medinensis
DME_0000899101
I
0.700
BXY_0632900
Bursaphelenchus xylophilus
BXY_0632900
I
0.700
nLs.2.1.2.g00270
Litomosoides sigmodontis
nLs.2.1.2.g00270
I
0.700
nAv.1.0.1.g00022
Acanthocheilonema viteae
nAv.1.0.1.g00022
I
0.700
TriadG9560
Trichoplax adhaerens
TriadG9560
I
0.699
ASIM_0001155801
Anisakis simplex
ASIM_0001155801
I
0.699
RSKR_0000094800
Rhabditophanes kr3021
RSKR_0000094800
I
0.699
GPLIN_000004000
Globodera pallida
GPLIN_000004000
I
0.698
TCLT_0000379201
Thelazia callipaeda
TCLT_0000379201
I
0.694
GM15106
Drosophila sechellia
FBgn0170026
I
0.688
GH19308
Drosophila grimshawi
FBgn0126773
I
0.688
GI23524
Drosophila mojavensis
FBgn0146250
I
0.688
GG14915
Drosophila erecta
FBgn0107169
I
0.688
GF18520
Drosophila ananassae
FBgn0095538
I
0.688
HHEX
Drosophila melanogaster
FBgn0038852
D
0.688
GA20065
Drosophila pseudoobscura
FBgn0080061
I
0.688
GD20010
Drosophila simulans
FBgn0191493
I
0.688
GL12681
Drosophila persimilis
FBgn0150287
I
0.688
GJ10276
Drosophila virilis
FBgn0197562
I
0.688
MESCA008304
Megaselia scalaris
MESCA008304
I
0.688
LCUP007736
Lucilia cuprina
LCUP007736
I
0.688
GK13080
Drosophila willistoni
FBgn0215089
I
0.688
MhA1_Contig193.frz3.gene1
Meloidogyne hapla
MhA1_Contig193.frz3.gene1
I
0.677
tetur29g00560
Tetranychus urticae
tetur29g00560
I
0.675
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf09384-processed-gene-0.0
I
0.671
scaffold24-EXSNAP2012.65
Pristionchus exspectatus
scaffold24-EXSNAP2012.65
I
0.661
DAPPUDRAFT_229438
Daphnia pulex
DAPPUDRAFT_229438
I
0.659
HelroG80789
Helobdella robusta
HelroG80789
I
0.656
CABZ01079847.1
Danio rerio
ENSDARG00000098231
I
0.618