CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RHOXF1
(
Homo sapiens
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSG00000101883
T209781_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene is a member of the PEPP subfamily of paired-like homoebox genes. The gene may be regulated by androgens and epigenetic mechanisms. The encoded nuclear protein is likely a transcription factor that may play a role in human reproduction. [provided by RefSeq, Dec 2012]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RHOXF1
M03089_2.00
Homo sapiens
RGATNAKCY
RGMTNATCY
SELEX
Jolma et al.(2013)
RHOXF1_1
(Direct)
(Direct)
RHOXF1
M03090_2.00
Homo sapiens
NTRAKCCN
NGGMTYAN
SELEX
Jolma et al.(2013)
RHOXF1_2
(Direct)
(Direct)
RHOXF1
M03091_2.00
Homo sapiens
VGMTHAKCC
GGMTDAKCB
SELEX
Jolma et al.(2013)
RHOXF1_3
(Direct)
(Direct)
RHOXF1
M03092_2.00
Homo sapiens
NTRAKCCH
DGGMTYAN
SELEX
Jolma et al.(2013)
RHOXF1_4
(Direct)
(Direct)
RHOXF1
M04947_2.00
Homo sapiens
NTRATCCN
NGGATYAN
SELEX
Yin et al.(2017)
RHOXF1_FL_HT-SELEX
(Direct)
(Direct)
RHOXF1
M04948_2.00
Homo sapiens
NTRATCCN
NGGATYAN
SELEX
Yin et al.(2017)
RHOXF1_FL_Methyl-HT-SELEX
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
dharma
M02080_2.00
Danio rerio
NNRAKCY
RGMTYNN
PBM
Weirauch et al.(2014)
pTH6530
0.670
0.561
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000217999
Homeodomain
104
160
RTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRARCRR
Links
Other
Homeodomain
family TFs
Other
Homo sapiens
TFs
32 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy