Lhx4 (Rattus norvegicus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSRNOG00000003595 T215337_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Lhx4
M00430_2.00
Mus musculus
NYAATHN

NDATTRN
PBM
Berger et al.(2008)
Lhx4_1719
0.656 0.930
Lhx4
M03257_2.00
Mus musculus
BTAATTRN

NYAATTAV
SELEX
Jolma et al.(2013)
Lhx4_1
0.656 0.930
LHX4
M05063_2.00
Homo sapiens
BYAATYRV

BYRATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_HT-SELEX
0.656 0.930
LHX4
M05066_2.00
Homo sapiens
BTAATTAN

NTAATTAV
SELEX
Yin et al.(2017)
LHX4_FL_HT-SELEX
0.656 0.930
LHX4
M05064_2.00
Homo sapiens
BYAATTRV

BYAATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_1
0.656 0.930
LHX4
M05065_2.00
Homo sapiens
NTWAYGHN

NDCRTWAN
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_2
0.656 0.930
LHX4
M05067_2.00
Homo sapiens
NYAATTRN

NYAATTRN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_1
0.656 0.930
LHX4
M05068_2.00
Homo sapiens
NTAAYGHN

NDCRTTAN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_2
0.656 0.930
Lhx3
M00435_2.00
Mus musculus
NNNYAATHW

WDATTRNNN
PBM
Berger et al.(2008)
Lhx3_3431
0.651 0.877
Lhx3
M02687_2.00
Mus musculus
VRWTAATTAATTW

WAATTAATTAWYB
SELEX
Mathelier et al.(2014)
MA0135.1
0.651 0.877
LHX3
M09137_2.00
Homo sapiens
NYTAATTAAWTHH

DDAWTTAATTARN
Misc
Kulakovskiy et al.(2013)
LHX3_HUMAN.H11MO.0.C
0.651 0.877
Lhx3
M09188_2.00
Mus musculus
NYTRATKRV

BYMATYARN
Misc
Kulakovskiy et al.(2013)
LHX3_MOUSE.H11MO.0.C
0.651 0.877
Lhx3
M09570_2.00
Mus musculus
NNBTAATTAV

BTAATTAVNN
Misc
Heinz et al.(2010)
Neuron-Lhx3_GSE31456
0.651 0.877
LHX3
M10657_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3A_01
0.651 0.877
LHX3
M10658_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3b_01
0.651 0.877
LHX3
M10659_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3_Q3
0.651 0.877
Lim3
M02116_2.00
Drosophila melanogaster
NNNNNATBRN

NYVATNNNNN
PBM
Weirauch et al.(2014)
pTH6478
0.643 0.860
Lim3
M03796_2.00
Drosophila melanogaster
BTAATTAV

BTAATTAV
SELEX
Nitta et al.(2015)
Lim3_1
0.643 0.860
Lim3
M06492_2.00
Drosophila melanogaster
HTAATKA

TMATTAD
B1H
Mathelier et al.(2014)
MA0195.1
0.643 0.860
Lim3
M06258_2.00
Drosophila melanogaster
HHTAATKA

TMATTADD
B1H
Zhu et al.(2011)
Lim3_Cell_FBgn0002023
0.643 0.860
Lim3
M06259_2.00
Drosophila melanogaster
HTRATTR

YAATYAD
B1H
Zhu et al.(2011)
Lim3_SOLEXA_FBgn0002023
0.643 0.860
C4B866_NEMVE
M02052_2.00
Nematostella vectensis
NNTTAATTARNN

NNYTAATTAANN
PBM
Weirauch et al.(2014)
pTH6176
0.600 0.596
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000060479 Homeodomain 157 213

Links

Other Homeodomain family TFs
Other Rattus norvegicus TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAPLG00000011072 Anas platyrhynchos ENSAPLG00000011072 I 0.687
ENSOARG00000018191 Ovis aries ENSOARG00000018191 I 0.656
ENSNLEG00000015953 Nomascus leucogenys ENSNLEG00000015953 I 0.656
ENSMPUG00000011451 Mustela putorius furo ENSMPUG00000011451 I 0.656
LHX4 Oryctolagus cuniculus ENSOCUG00000005182 I 0.656
Lhx4 Mus musculus ENSMUSG00000026468 D 0.656
LHX4 Otolemur garnettii ENSOGAG00000016064 I 0.656
ENSPANG00000011378 Papio anubis ENSPANG00000011378 I 0.656
lhx4 Oryzias latipes ENSORLG00000017360 I 0.656
LHX4 Ochotona princeps ENSOPRG00000009780 I 0.656
ENSONIG00000001917 Oreochromis niloticus ENSONIG00000001917 I 0.656
LHX4 Monodelphis domestica ENSMODG00000006371 I 0.656
LHX4 Myotis lucifugus ENSMLUG00000000926 I 0.656
LHX4 Gorilla gorilla ENSGGOG00000013931 I 0.656
ENSGALG00000001735 Gallus gallus ENSGALG00000001735 I 0.656
lhx4 Gasterosteus aculeatus ENSGACG00000010846 I 0.656
LHX4 Homo sapiens ENSG00000121454 D 0.656
ENSLACG00000009155 Latimeria chalumnae ENSLACG00000009155 I 0.656
LHX4 Loxodonta africana ENSLAFG00000015360 I 0.656
LHX4 Microcebus murinus ENSMICG00000017555 I 0.656
LHX4 Meleagris gallopavo ENSMGAG00000002905 I 0.656
ENSMEUG00000002639 Macropus eugenii ENSMEUG00000002639 I 0.656
ENSLOCG00000009245 Lepisosteus oculatus ENSLOCG00000009245 I 0.656
ENSMMUG00000012050 Macaca mulatta ENSMMUG00000012050 I 0.656
LHX4 Procavia capensis ENSPCAG00000011090 I 0.656
Afo_R008202 Aptenodytes forsteri Afo_R008202 I 0.656
Cmyd_10016789 Chelonia mydas Cmyd_10016789 I 0.656
Aan_R010265 Calypte anna Aan_R010265 I 0.656
LHX4 Tursiops truncatus ENSTTRG00000012291 I 0.656
lhx4 Takifugu rubripes ENSTRUG00000010188 I 0.656
ENSP00000263726-D1 Bos grunniens ENSP00000263726-D1 I 0.656
ENSP00000263726 Macaca fascicularis ENSP00000263726 I 0.656
lhx4 Xenopus tropicalis XB-GENE-492744 I 0.656
Pvit_16353 Pogona vitticeps Pvit_16353 I 0.656
Ogr10742 Ophisaurus gracilis Ogr10742 I 0.656
Myotis_brandtii_Lhx4_10022811 Myotis brandtii Myotis_brandtii_Lhx4_10022811 I 0.656
lhx4 Tetraodon nigroviridis ENSTNIG00000015501 I 0.656
ENSTGUG00000017372 Taeniopygia guttata ENSTGUG00000017372 I 0.656
ENSPPYG00000000451 Pongo abelii ENSPPYG00000000451 I 0.656
ENSPFOG00000009126 Poecilia formosa ENSPFOG00000009126 I 0.656
ENSPFOG00000008766 Poecilia formosa ENSPFOG00000008766 I 0.656
ENSPFOG00000008745 Poecilia formosa ENSPFOG00000008745 I 0.656
ENSPSIG00000010498 Pelodiscus sinensis ENSPSIG00000010498 I 0.656
LHX4 Pan troglodytes ENSPTRG00000001740 I 0.656
ENSSTOG00000015761 Ictidomys tridecemlineatus ENSSTOG00000015761 I 0.656
LHX4 Sus scrofa ENSSSCG00000015536 I 0.656
ENSSHAG00000010646 Sarcophilus harrisii ENSSHAG00000010646 I 0.656
ENSPVAG00000012215 Pteropus vampyrus ENSPVAG00000012215 I 0.656
LHX4 Felis catus ENSFCAG00000005479 I 0.656
ENSXMAG00000018968 Xiphophorus maculatus ENSXMAG00000018968 I 0.656
ENSDORG00000014432 Dipodomys ordii ENSDORG00000014432 I 0.656
LHX4 Equus caballus ENSECAG00000000218 I 0.656
ENSAMEG00000002919 Ailuropoda melanoleuca ENSAMEG00000002919 I 0.656
LHX4 Anolis carolinensis ENSACAG00000000857 I 0.656
LHX4 Canis familiaris ENSCAFG00000012750 I 0.656
ENSCSAG00000012389 Chlorocebus sabaeus ENSCSAG00000012389 I 0.656
lhx4 Danio rerio ENSDARG00000039458 I 0.656
LHX4 Dasypus novemcinctus ENSDNOG00000038172 I 0.656
LHX4 Cavia porcellus ENSCPOG00000002285 I 0.656
ENSAMXG00000014667 Astyanax mexicanus ENSAMXG00000014667 I 0.656
LHX4 Bos taurus ENSBTAG00000003992 I 0.656
LHX4 Echinops telfairi ENSETEG00000014990 I 0.656
LHX4 Callithrix jacchus ENSCJAG00000007973 I 0.656
ENSFALG00000008075 Ficedula albicollis ENSFALG00000008075 I 0.656
LHX4 Choloepus hoffmanni ENSCHOG00000012355 I 0.656
LHX4 Erinaceus europaeus ENSEEUG00000013869 I 0.656
lhx3 Oryzias latipes ENSORLG00000006699 I 0.655
ENSPSIG00000008129 Pelodiscus sinensis ENSPSIG00000008129 I 0.655
ENSAMXG00000021021 Astyanax mexicanus ENSAMXG00000021021 I 0.655
LHX3 Procavia capensis ENSPCAG00000016565 I 0.655
LHX3 Anolis carolinensis ENSACAG00000015639 I 0.655
ENSSHAG00000011489 Sarcophilus harrisii ENSSHAG00000011489 I 0.655
LHX3 Takifugu rubripes ENSTRUG00000007321 I 0.655
Brh_R005774 Buceros rhinoceros Brh_R005774 I 0.655
Cmyd_10017140 Chelonia mydas Cmyd_10017140 I 0.655
Alligator_sinensis_CCG016166.1 Alligator sinensis Alligator_sinensis_CCG016166.1 I 0.655
Afo_R013790 Aptenodytes forsteri Afo_R013790 I 0.655
ML068131a Mnemiopsis leidyi ML068131a I 0.655
Ogr05269 Ophisaurus gracilis Ogr05269 I 0.655
Pvit_04673 Pogona vitticeps Pvit_04673 I 0.655
ENSXMAG00000011308 Xiphophorus maculatus ENSXMAG00000011308 I 0.655
LHX3 Tetraodon nigroviridis ENSTNIG00000018735 I 0.655
XP_002935283 Xenopus tropicalis XP_002935283 I 0.655
lhx3.L Xenopus laevis XB-GENE-865930 I 0.655
Sakowv30024418m.g Saccoglossus kowalevskii Sakowv30024418m.g I 0.655
LHX3 Taeniopygia guttata ENSTGUG00000006385 I 0.655
ENSPFOG00000010956 Poecilia formosa ENSPFOG00000010956 I 0.655
LHX3 Loxodonta africana ENSLAFG00000030780 I 0.655
ENSONIG00000014981 Oreochromis niloticus ENSONIG00000014981 I 0.655
ENSGMOG00000015270 Gadus morhua ENSGMOG00000015270 I 0.655
ENSLACG00000016988 Latimeria chalumnae ENSLACG00000016988 I 0.655
LHX3 Meleagris gallopavo ENSMGAG00000003074 I 0.655
LHX3 Gallus gallus ENSGALG00000003928 I 0.655
LHX3 Gasterosteus aculeatus ENSGACG00000016592 I 0.655
LHX3 Dasypus novemcinctus ENSDNOG00000041900 I 0.655
LHX3 Monodelphis domestica ENSMODG00000017549 I 0.655
ENSLOCG00000003880 Lepisosteus oculatus ENSLOCG00000003880 I 0.655
ENSFALG00000001776 Ficedula albicollis ENSFALG00000001776 I 0.655
SPU_001975 Strongylocentrotus purpuratus SPU_001975 I 0.653
ENSGMOG00000013733 Gadus morhua ENSGMOG00000013733 I 0.652
B_00324 Schistosoma haematobium B_00324 I 0.651
SMTD_0001568701 Schistosoma mattheei SMTD_0001568701 I 0.651
LHX3 Tursiops truncatus ENSTTRG00000007569 I 0.651
CapteG228137 Capitella teleta CapteG228137 I 0.651
Ocbimv22036419m.g Octopus bimaculoides Ocbimv22036419m.g I 0.651
LHX3 Homo sapiens ENSG00000107187 D 0.651
HelroG70815 Helobdella robusta HelroG70815 I 0.651
LHX3 Erinaceus europaeus ENSEEUG00000014517 I 0.651
CGI_10028171 Crassostrea gigas CGI_10028171 I 0.651
LHX3 Equus caballus ENSECAG00000021983 I 0.651
LHX3 Macaca mulatta ENSMMUG00000004882 I 0.651
ENSNLEG00000008943 Nomascus leucogenys ENSNLEG00000008943 I 0.651
Lhx3 Mus musculus ENSMUSG00000026934 D 0.651
LHX3 Cavia porcellus ENSCPOG00000007109 I 0.651
ENSPPYG00000019765 Pongo abelii ENSPPYG00000019765 I 0.651
ENSOARG00000004750 Ovis aries ENSOARG00000004750 I 0.651
LHX3 Callithrix jacchus ENSCJAG00000010692 I 0.651
LHX3 Bos taurus ENSBTAG00000011124 I 0.651
csin107675 Clonorchis sinensis csin107675 I 0.651
ENSPANG00000026122 Papio anubis ENSPANG00000026122 I 0.651
LHX3 Otolemur garnettii ENSOGAG00000000723 I 0.651
ENSSTOG00000005001 Ictidomys tridecemlineatus ENSSTOG00000005001 I 0.651
D915_05094 Fasciola hepatica D915_05094 I 0.651
LHX3 Pteropus vampyrus ENSPVAG00000002969 I 0.651
ENSCSAG00000015739 Chlorocebus sabaeus ENSCSAG00000015739 I 0.651
Lhx3 Rattus norvegicus ENSRNOG00000018427 I 0.651
LHX3 Pan troglodytes ENSPTRG00000021546 I 0.651
Sjc_0089860 Schistosoma japonicum Sjc_0089860 I 0.647
TASK_0000701901 Taenia asiatica TASK_0000701901 I 0.646
LotgiG109201 Lottia gigantea LotgiG109201 I 0.646
BGLB007490 Biomphalaria glabrata BGLB007490 I 0.646
HDID_0000746201 Hymenolepis diminuta HDID_0000746201 I 0.646
ECANG7_04967 Echinococcus canadensis ECANG7_04967 I 0.644
EmuJ_000380300 Echinococcus multilocularis EmuJ_000380300 I 0.644
RPRC009766 Rhodnius prolixus RPRC009766 I 0.643
LCUP014100 Lucilia cuprina LCUP014100 I 0.643
SMAR009534 Strigamia maritima SMAR009534 I 0.643
HHAL002881-PA Halyomorpha halys HHAL002881-PA I 0.643
PHUM248980 Pediculus humanus PHUM248980 I 0.643
ACYPI005445 Acyrthosiphon pisum ACYPI005445 I 0.643
MDOA000794 Musca domestica MDOA000794 I 0.643
TC014400 Tribolium castaneum TC014400 I 0.643
LDEC008941 Leptinotarsa decemlineata LDEC008941 I 0.643
GL21131 Drosophila persimilis FBgn0158725 I 0.643
GM17030 Drosophila sechellia FBgn0171942 I 0.643
GL21181 Drosophila persimilis FBgn0158774 I 0.643
GD21780 Drosophila simulans FBgn0193200 I 0.643
GJ17996 Drosophila virilis FBgn0205162 I 0.643
GK24239 Drosophila willistoni FBgn0226200 I 0.643
GI17237 Drosophila mojavensis FBgn0139981 I 0.643
GH13485 Drosophila grimshawi FBgn0120961 I 0.643
Lim3 Drosophila melanogaster FBgn0002023 D 0.643
GA10505 Drosophila pseudoobscura FBgn0070562 I 0.643
GF15212 Drosophila ananassae FBgn0092237 I 0.643
NV11112 Nasonia vitripennis NV11112 I 0.643
GE12672 Drosophila yakuba FBgn0230399 I 0.643
GG21652 Drosophila erecta FBgn0113830 I 0.643
L798_11153 Zootermopsis nevadensis L798_11153 I 0.643
ISCW004213 Ixodes scapularis ISCW004213 I 0.643
tetur01g09570 Tetranychus urticae tetur01g09570 I 0.642
ACUA000704 Anopheles culicifacies ACUA000704 I 0.639
ENSCING00000009072 Ciona intestinalis ENSCING00000009072 I 0.639
ADIR006174 Anopheles dirus ADIR006174 I 0.639
AEPI004951 Anopheles epiroticus AEPI004951 I 0.639
ACOM027311 Anopheles coluzzii ACOM027311 I 0.639
ENSCSAVG00000000590 Ciona savignyi ENSCSAVG00000000590 I 0.639
AARA008627 Anopheles arabiensis AARA008627 I 0.639
AATE004438 Anopheles atroparvus AATE004438 I 0.639
ACHR007341 Anopheles christyi ACHR007341 I 0.639
AFAF019238 Anopheles farauti AFAF019238 I 0.639
AFUN002924 Anopheles funestus AFUN002924 I 0.639
AQUA004150 Anopheles quadriannulatus AQUA004150 I 0.639
ASTEI07195 Anopheles stephensi ASTEI07195 I 0.639
CPIJ013309 Culex quinquefasciatus CPIJ013309 I 0.639
AMIN009631 Anopheles minimus AMIN009631 I 0.639
AMEM005872 Anopheles merus AMEM005872 I 0.639
GB45975 Apis mellifera GB45975 I 0.639
AMAM002559 Anopheles maculatus AMAM002559 I 0.639
AMEC009261 Anopheles melas AMEC009261 I 0.639
DAPPUDRAFT_323670 Daphnia pulex DAPPUDRAFT_323670 I 0.639
AALB001723 Anopheles albimanus AALB001723 I 0.639
Hsal_00750--XP_394135.2_APIME Harpegnathos saltator Hsal_00750--XP_394135.2_APIME I 0.639
AAEL010744 Aedes aegypti AAEL010744 I 0.639
ADAC007596 Anopheles darlingi ADAC007596 I 0.639
AGAP009088 Anopheles gambiae AGAP009088 I 0.639
Cflo_06863--XP_394135.2_APIME Camponotus floridanus Cflo_06863--XP_394135.2_APIME I 0.639
AAEL007120 Aedes aegypti AAEL007120 I 0.639
ACEP12062 Atta cephalotes ACEP12062 I 0.639
CLEC007091 Cimex lectularius CLEC007091 I 0.639
SINV21521 Solenopsis invicta SINV21521 I 0.639
CpipJ_CPIJ013309 Culex pipiens CpipJ_CPIJ013309 I 0.639
D917_02846 Trichinella nativa D917_02846 I 0.637
D918_06090 Trichuris suis D918_06090 I 0.637
TTRE_0000083101 Trichuris trichiura TTRE_0000083101 I 0.637
HMEL009385 Heliconius melpomene HMEL009385 I 0.637
SBAD_0000321801 Soboliphyme baturini SBAD_0000321801 I 0.637
KGM_15077 Danaus plexippus KGM_15077 I 0.637
EFV60475 Trichinella spiralis EFV60475 I 0.637
BGIBMGA003208 Bombyx mori BGIBMGA003208 I 0.637
L898_g7333 Steinernema monticolum L898_g7333 I 0.632
L596_g9351 Steinernema carpocapsae L596_g9351 I 0.632
BXY_1186000 Bursaphelenchus xylophilus BXY_1186000 I 0.632
L893_g20920 Steinernema glaseri L893_g20920 I 0.632
L892_g26434 Steinernema scapterisci L892_g26434 I 0.632
scaffold153-EXSNAP2012.13 Pristionchus exspectatus scaffold153-EXSNAP2012.13 I 0.632
L889_g28690 Steinernema feltiae L889_g28690 I 0.632
Ppa-ceh-14 Pristionchus pacificus PPA07038 I 0.632
CJA10991 Caenorhabditis japonica CJA10991 I 0.632
ceh-14 Caenorhabditis elegans WBGene00000438 I 0.632
CBG16718 Caenorhabditis briggsae CBG16718 I 0.632
HCOI01026600 Haemonchus contortus HCOI01026600 I 0.631
NBR_0000884501 Nippostrongylus brasiliensis NBR_0000884501 I 0.631
NECAME_02648 Necator americanus NECAME_02648 I 0.631
HCOI01712400 Haemonchus contortus HCOI01712400 I 0.631
ANCCEY_02209 Ancylostoma ceylanicum ANCCEY_02209 I 0.631
ACAC_0001296301 Angiostrongylus cantonensis ACAC_0001296301 I 0.631
ANCCAN_13385 Ancylostoma caninum ANCCAN_13385 I 0.631
ANCDUO_22350 Ancylostoma duodenale ANCDUO_22350 I 0.631
CRE00056 Caenorhabditis remanei CRE00056 I 0.631
PEQ_0000868201 Parascaris equorum PEQ_0000868201 I 0.620
PTRK_0000024200 Parastrongyloides trichosuri PTRK_0000024200 I 0.620
SMUV_0000656101 Syphacia muris SMUV_0000656101 I 0.620
TCLT_0000976401 Thelazia callipaeda TCLT_0000976401 I 0.620
SVE_1019700 Strongyloides venezuelensis SVE_1019700 I 0.620
nOo.2.0.1.g00228 Onchocerca ochengi nOo.2.0.1.g00228 I 0.620
SSTP_0001189400 Strongyloides stercoralis SSTP_0001189400 I 0.620
SPAL_0000745400 Strongyloides papillosus SPAL_0000745400 I 0.620
CBN04927 Caenorhabditis brenneri CBN04927 I 0.620
nAv.1.0.1.g05930 Acanthocheilonema viteae nAv.1.0.1.g05930 I 0.620
Minc17568 Meloidogyne incognita Minc17568 I 0.620
WUBG_13886 Wuchereria bancrofti WUBG_13886 I 0.620
EVEC_0000937801 Enterobius vermicularis EVEC_0000937801 I 0.620
EEL_0001001601 Elaeophora elaphi EEL_0001001601 I 0.620
ASIM_0001348601 Anisakis simplex ASIM_0001348601 I 0.620
nLs.2.1.2.g00691 Litomosoides sigmodontis nLs.2.1.2.g00691 I 0.620
Bm4142 Brugia malayi Bm4142 I 0.620
nDi.2.2.2.g04215 Dirofilaria immitis nDi.2.2.2.g04215 I 0.620
WBGene00239708 Onchocerca volvulus WBGene00239708 I 0.620
LOAG_04639 Loa loa LOAG_04639 I 0.620
ASU_03268 Ascaris suum ASU_03268 I 0.620
GPLIN_001089100 Globodera pallida GPLIN_001089100 I 0.601
C4B866_NEMVE Nematostella vectensis C4B866_NEMVE D 0.600