CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSTOG00000014748
(
Ictidomys tridecemlineatus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSSTOG00000014748
T216005_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PBX2
M08134_2.00
Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN
ChIP-seq
Mathelier et al.(2014)
MA1113.1
0.867
1.000
PBX2
M09165_2.00
Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C
0.867
1.000
Pbx2
M09199_2.00
Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM
Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C
0.867
1.000
pbx4
M02110_2.00
Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA
PBM
Weirauch et al.(2014)
pTH6425
0.867
0.982
Pbx1
M00513_2.00
Mus musculus
NNDKANNNN
NNNNTMHNN
PBM
Berger et al.(2008)
Pbx1_3203
0.867
0.965
PBX1
M05362_2.00
Homo sapiens
NTGATKGAYR
YRTCMATCAN
SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX
0.867
0.965
PBX1
M05364_2.00
Homo sapiens
DTGMTKGRYN
NRYCMAKCAH
SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX
0.867
0.965
PBX1
M02685_2.00
Homo sapiens
WWTGATTGATND
HNATCAATCAWW
SELEX
Mathelier et al.(2014)
MA0070.1
0.867
0.965
PBX1
M09164_2.00
Homo sapiens
DGABTGRCRG
CYGYCAVTCH
Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A
0.867
0.965
PBX1
M09561_2.00
Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA
Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007
0.867
0.965
PBX1
M10748_2.00
Homo sapiens
WTKATTRDT
AHYAATMAW
Transfac
Matys et al.(2006)
V$PBX1_01
0.867
0.965
PBX1
M10749_2.00
Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH
Transfac
Matys et al.(2006)
V$PBX1_02
0.867
0.965
PBX1
M10750_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_03
0.867
0.965
PBX1
M10751_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_05
0.867
0.965
PBX1
M10752_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_10
0.867
0.965
PBX1
M10753_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX1_Q3
0.867
0.965
PBX1
M05363_2.00
Homo sapiens
DTGAKKGAYG
CRTCMMTCAH
SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX
0.867
0.965
PBX1
M05365_2.00
Homo sapiens
MRTCAATCMH
DKGATTGAYK
SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX
0.867
0.965
Pbx3
M09205_2.00
Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV
Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A
0.865
0.965
exd
M06487_2.00
Drosophila melanogaster
YRTCAAAN
NTTTGAYR
B1H
Mathelier et al.(2014)
MA0222.1
0.822
0.947
exd
M06243_2.00
Drosophila melanogaster
YRTCAAAN
NTTTGAYR
B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611
0.822
0.947
exd
M06244_2.00
Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN
B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611
0.822
0.947
exd
M06245_2.00
Drosophila melanogaster
NDTGAYRW
WYRTCAHN
B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611
0.822
0.947
exd
M06246_2.00
Drosophila melanogaster
NNDTGAYR
YRTCAHNN
B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611
0.822
0.947
PBX4
M00277_2.00
Homo sapiens
NNDDWHDNNN
NNNHDWHHNN
PBM
Barrera et al.(2016)
PBX4_REF
0.815
0.912
PBX4
M10649_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX4_01
0.815
0.912
CBG10835
M01243_2.00
Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN
PBM
Lambert et al.(2019)
pTH11444
0.691
0.579
PBX4
M00276_2.00
Homo sapiens
NYTAATTADNN
NNHTAATTARN
PBM
Barrera et al.(2016)
PBX4_R215Q
0.677
0.895
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000013213
Homeodomain
245
304
RRKRRNFSKQATEVLNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK
Links
Other
Homeodomain
family TFs
Other
Ictidomys tridecemlineatus
TFs
435 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ey
Drosophila melanogaster
FBgn0005558
D
0.000
Pax6
Mus musculus
ENSMUSG00000027168
D
0.000
NEMVEDRAFT_v1g136480
Nematostella vectensis
NEMVEDRAFT_v1g136480
D
0.000
LCUP011798
Lucilia cuprina
LCUP011798
I
0.000
AFUN002667
Anopheles funestus
AFUN002667
I
0.000
AFUN004920
Anopheles funestus
AFUN004920
I
0.000
AMAM010839
Anopheles maculatus
AMAM010839
I
0.000
AMAM022462
Anopheles maculatus
AMAM022462
I
0.000
AMEM005969
Anopheles merus
AMEM005969
I
0.000
AMIN006554
Anopheles minimus
AMIN006554
I
0.000
AQUA000003
Anopheles quadriannulatus
AQUA000003
I
0.000
AQUA006727
Anopheles quadriannulatus
AQUA006727
I
0.000
BGLB009051
Biomphalaria glabrata
BGLB009051
I
0.000
LLOJ006069
Lutzomyia longipalpis
LLOJ006069
I
0.000
PPAI007516
Phlebotomus papatasi
PPAI007516
I
0.000
A_06809
Schistosoma haematobium
A_06809
I
0.000
AFAF020744
Anopheles farauti
AFAF020744
I
0.000
AEPI009864
Anopheles epiroticus
AEPI009864
I
0.000
AEPI007688
Anopheles epiroticus
AEPI007688
I
0.000
LCUP013026
Lucilia cuprina
LCUP013026
I
0.000
LCUP015672
Lucilia cuprina
LCUP015672
I
0.000
LDEC009603
Leptinotarsa decemlineata
LDEC009603
I
0.000
LDEC011614
Leptinotarsa decemlineata
LDEC011614
I
0.000
SNAPOd2T00015303001
Oikopleura dioica
SNAPOd2T00015303001
I
0.000
XP_002938577
Xenopus tropicalis
XP_002938577
I
0.000
AALB001245
Anopheles albimanus
AALB001245
I
0.000
AARA005848
Anopheles arabiensis
AARA005848
I
0.000
ACHR005004
Anopheles christyi
ACHR005004
I
0.000
ACHR007975
Anopheles christyi
ACHR007975
I
0.000
ACUA006364
Anopheles culicifacies
ACUA006364
I
0.000
ACUA016236
Anopheles culicifacies
ACUA016236
I
0.000
ADIR009742
Anopheles dirus
ADIR009742
I
0.000
ANCCAN_00245
Ancylostoma caninum
ANCCAN_00245
I
0.000
ANCCEY_08415
Ancylostoma ceylanicum
ANCCEY_08415
I
0.000
ANCDUO_04304
Ancylostoma duodenale
ANCDUO_04304
I
0.000
NECAME_04523
Necator americanus
NECAME_04523
I
0.000
nLs.2.1.2.g01340
Litomosoides sigmodontis
nLs.2.1.2.g01340
I
0.000
nOo.2.0.1.g09807
Onchocerca ochengi
nOo.2.0.1.g09807
I
0.000
nRc.2.0.1.g25805
Romanomermis culicivorax
nRc.2.0.1.g25805
I
0.000
OESDEN_03125
Oesophagostomum dentatum
OESDEN_03125
I
0.000
OFLC_0000197901
Onchocerca flexuosa
OFLC_0000197901
I
0.000
SMTD_0001329401
Schistosoma mattheei
SMTD_0001329401
I
0.000
SMUV_0001111201
Syphacia muris
SMUV_0001111201
I
0.000
SROB_0000988801
Schistosoma rodhaini
SROB_0000988801
I
0.000
TCLT_0000211001
Thelazia callipaeda
TCLT_0000211001
I
0.000
TELCIR_00312
Teladorsagia circumcincta
TELCIR_00312
I
0.000
TRE_0000697601
Trichobilharzia regenti
TRE_0000697601
I
0.000
ENSCSAVG00000004794
Ciona savignyi
ENSCSAVG00000004794
I
0.000
nDi.2.2.2.g03676
Dirofilaria immitis
nDi.2.2.2.g03676
I
0.000
NBR_0001845501
Nippostrongylus brasiliensis
NBR_0001845501
I
0.000
nAv.1.0.1.g05049
Acanthocheilonema viteae
nAv.1.0.1.g05049
I
0.000
ASU_08111
Ascaris suum
ASU_08111
I
0.000
BTMF_0001218901
Brugia timori
BTMF_0001218901
I
0.000
CGOC_0000172601
Cylicostephanus goldi
CGOC_0000172601
I
0.000
D915_05710
Fasciola hepatica
D915_05710
I
0.000
DICVIV_11711
Dictyocaulus viviparus
DICVIV_11711
I
0.000
ECPE_0000989001
Echinostoma caproni
ECPE_0000989001
I
0.000
L596_g12356
Steinernema carpocapsae
L596_g12356
I
0.000
EVEC_0000950501
Enterobius vermicularis
EVEC_0000950501
I
0.000
GPUH_0000746301
Gongylonema pulchrum
GPUH_0000746301
I
0.000
HPLM_0000341801
Haemonchus placei
HPLM_0000341801
I
0.000
L889_g29911
Steinernema feltiae
L889_g29911
I
0.000
L893_g1042
Steinernema glaseri
L893_g1042
I
0.000
L898_g33070
Steinernema monticolum
L898_g33070
I
0.000
vab-3
Caenorhabditis elegans
WBGene00006870
I
0.000
HHAL002779-PA
Halyomorpha halys
HHAL002779-PA
I
0.000
CpipJ_CPIJ014198
Culex pipiens
CpipJ_CPIJ014198
I
0.000
pax3/7-like
Ciona intestinalis
ENSCING00000013561
I
0.000
ENSCSAVG00000005353
Ciona savignyi
ENSCSAVG00000005353
I
0.000
pax10
Danio rerio
ENSDARG00000053364
I
0.000
PAX6
Erinaceus europaeus
ENSEEUG00000014014
I
0.000
pax10
Gasterosteus aculeatus
ENSGACG00000007835
I
0.000
ENSGMOG00000007260
Gadus morhua
ENSGMOG00000007260
I
0.000
ENSLOCG00000017168
Lepisosteus oculatus
ENSLOCG00000017168
I
0.000
ENSMGAG00000001533
Meleagris gallopavo
ENSMGAG00000001533
I
0.000
ENSMGAG00000004645
Meleagris gallopavo
ENSMGAG00000004645
I
0.000
ENSMLUG00000002244
Myotis lucifugus
ENSMLUG00000002244
I
0.000
ENSONIG00000020082
Oreochromis niloticus
ENSONIG00000020082
I
0.000
ENSPFOG00000004477
Poecilia formosa
ENSPFOG00000004477
I
0.000
ENSPFOG00000006769
Poecilia formosa
ENSPFOG00000006769
I
0.000
PAX6
Choloepus hoffmanni
ENSCHOG00000001954
I
0.000
ENSAPLG00000011062
Anas platyrhynchos
ENSAPLG00000011062
I
0.000
ENSAMXG00000021103
Astyanax mexicanus
ENSAMXG00000021103
I
0.000
WUBG_04585
Wuchereria bancrofti
WUBG_04585
I
0.000
ACEP15305
Atta cephalotes
ACEP15305
I
0.000
ACEP19559
Atta cephalotes
ACEP19559
I
0.000
ACYPI067723
Acyrthosiphon pisum
ACYPI067723
I
0.000
BGIBMGA009546
Bombyx mori
BGIBMGA009546
I
0.000
Bm3369
Brugia malayi
Bm3369
I
0.000
CapteG228124
Capitella teleta
CapteG228124
I
0.000
CBG04483
Caenorhabditis briggsae
CBG04483
I
0.000
CJA11736
Caenorhabditis japonica
CJA11736
I
0.000
CPIJ014198
Culex quinquefasciatus
CPIJ014198
I
0.000
DAPPUDRAFT_9094
Daphnia pulex
DAPPUDRAFT_9094
I
0.000
ENSACAG00000013797
Anolis carolinensis
ENSACAG00000013797
I
0.000
ENSAMXG00000010055
Astyanax mexicanus
ENSAMXG00000010055
I
0.000
ENSPPYG00000029808
Pongo abelii
ENSPPYG00000029808
I
0.000
PAX3
Vicugna pacos
ENSVPAG00000000715
I
0.000
HHAL001220-PA
Halyomorpha halys
HHAL001220-PA
I
0.000
YQE_06850
Dendroctonus ponderosae
YQE_06850
I
0.000
SMAR006838
Strigamia maritima
SMAR006838
I
0.000
SPU_006787
Strongylocentrotus purpuratus
SPU_006787
I
0.000
WBGene00241133
Onchocerca volvulus
WBGene00241133
I
0.000
YQE_05108
Dendroctonus ponderosae
YQE_05108
I
0.000
YQE_12757
Dendroctonus ponderosae
YQE_12757
I
0.000
YQE_12760
Dendroctonus ponderosae
YQE_12760
I
0.000
Brh_R002767
Buceros rhinoceros
Brh_R002767
I
0.000
Cflo_06474--XP_394848.3_APIME
Camponotus floridanus
Cflo_06474--XP_394848.3_APIME
I
0.000
Cmyd_10010531
Chelonia mydas
Cmyd_10010531
I
0.000
Tal_R002183
Tyto alba
Tal_R002183
I
0.000
Tal_R002397
Tyto alba
Tal_R002397
I
0.000
Ocbimv22021713m.g
Octopus bimaculoides
Ocbimv22021713m.g
I
0.000
CLEC008732
Cimex lectularius
CLEC008732
I
0.000
CLEC009744
Cimex lectularius
CLEC009744
I
0.000
SINV15875
Solenopsis invicta
SINV15875
I
0.000
KGM_18864
Danaus plexippus
KGM_18864
I
0.000
LotgiG80560
Lottia gigantea
LotgiG80560
I
0.000
ENSXMAG00000017245
Xiphophorus maculatus
ENSXMAG00000017245
I
0.000
NEMVEDRAFT_v1g119152
Nematostella vectensis
NEMVEDRAFT_v1g119152
I
0.000
Pax3
Dipodomys ordii
ENSDORG00000010324
I
0.000
HMEL012214
Heliconius melpomene
HMEL012214
I
0.000
PHUM217100
Pediculus humanus
PHUM217100
I
0.000
KGM_00017
Danaus plexippus
KGM_00017
I
0.000
LOAG_18403
Loa loa
LOAG_18403
I
0.000
Ppa-ceh-8
Pristionchus pacificus
PPA03443
I
0.000
Ocbimv22007835m.g
Octopus bimaculoides
Ocbimv22007835m.g
I
0.000
SPER_0001490801
Spirometra erinaceieuropaei
SPER_0001490801
N
0.000
A_02894
Schistosoma haematobium
A_02894
N
0.000
BTMF_0001220401
Brugia timori
BTMF_0001220401
N
0.000
PRRX1
Pteropus vampyrus
ENSPVAG00000007390
N
0.000
ENSTNIG00000000660
Tetraodon nigroviridis
ENSTNIG00000000660
N
0.000
scaffold324-EXSNAP2012.26
Pristionchus exspectatus
scaffold324-EXSNAP2012.26
N
0.000
OFLC_0001260901
Onchocerca flexuosa
OFLC_0001260901
N
0.000
MhA1_Contig2347.frz3.gene1
Meloidogyne hapla
MhA1_Contig2347.frz3.gene1
N
0.000
nAv.1.0.1.g00204
Acanthocheilonema viteae
nAv.1.0.1.g00204
N
0.000
Smp_142440
Schistosoma mansoni
Smp_142440
N
0.000
Hba_09393
Heterorhabditis bacteriophora
Hba_09393
N
0.000
WBGene00247364
Onchocerca volvulus
WBGene00247364
N
0.000
nOo.2.0.1.g04238
Onchocerca ochengi
nOo.2.0.1.g04238
N
0.000
maker-nMf.1.1.scaf03862-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf03862-augustus-gene-0.3
N
0.000
nRc.2.0.1.g45424
Romanomermis culicivorax
nRc.2.0.1.g45424
N
0.000
ANCCAN_28303
Ancylostoma caninum
ANCCAN_28303
N
0.000
OESDEN_08717
Oesophagostomum dentatum
OESDEN_08717
N
0.000
ALUE_0001653301
Ascaris lumbricoides
ALUE_0001653301
N
0.000
EEL_0000119001
Elaeophora elaphi
EEL_0000119001
N
0.000