CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-pir_contig_1826-fgenesh-gene-0.0
(
Pythium irregulare
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
maker-pir_contig_1826-fgenesh-gene-0.0
T220404_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra73700
M02158_2.00
Phytophthora ramorum
NTGAYDNNBN
NVNNHRTCAN
PBM
Weirauch et al.(2014)
pTH7815
0.867
0.964
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EPrPI00000024548
Homeodomain
135
194
TRRGTLNPEAKNVLKAWMFSPEHFAHPYPSEEEKEELASEAGIEVKQLSNWFTNARKRLW
Links
Other
Homeodomain
family TFs
Other
Pythium irregulare
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy