PPA19070 (Pristionchus pacificus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PPA19070 T222637_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxd12_CONSTRUCT
M00538_2.00 		PBM CONSTRUCTS
NWTWAYNDBN
NVHNRTWAWN		 PBM
Berger et al.(2008)
Hoxd12_3481 		0.622 0.545
HOXD12
M03206_2.00 		Homo sapiens
SYAATAAAA
TTTTATTRS		 SELEX
Jolma et al.(2013)
HOXD12_1 		0.622 0.545
HOXD12
M03207_2.00 		Homo sapiens
RVTCGTAAAAH
DTTTTACGABY		 SELEX
Jolma et al.(2013)
HOXD12_2 		0.622 0.545
HOXD12
M03208_2.00 		Homo sapiens
NRTCGTAAAHN
NDTTTACGAYN		 SELEX
Jolma et al.(2013)
HOXD12_3 		0.622 0.545
HOXD12
M03209_2.00 		Homo sapiens
DTTWATYRC
GYRATWAAH		 SELEX
Jolma et al.(2013)
HOXD12_4 		0.622 0.545
HOXD12
M05279_2.00 		Homo sapiens
NKTWACGAYN
NRTCGTWAMN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_HT-SELEX 		0.622 0.545
HOXD12
M05280_2.00 		Homo sapiens
NRTCGTAAAH
DTTTACGAYN		 SELEX
Yin et al.(2017)
HOXD12_eDBD_Methyl-HT-SELEX 		0.622 0.545
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PPA19070 Homeodomain 121 164

Links

Other Homeodomain family TFs
Other Pristionchus pacificus TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PTRK_0000303300 Parastrongyloides trichosuri PTRK_0000303300 I 0.642
RSKR_0000904600 Rhabditophanes kr3021 RSKR_0000904600 I 0.642
SSTP_0000071500 Strongyloides stercoralis SSTP_0000071500 I 0.634
SVE_1848200 Strongyloides venezuelensis SVE_1848200 I 0.634
SPAL_0000659000 Strongyloides papillosus SPAL_0000659000 I 0.634
SMUV_0000036501 Syphacia muris SMUV_0000036501 I 0.626
HOXD12 Oryctolagus cuniculus ENSOCUG00000002412 I 0.622
ENSNLEG00000006006 Nomascus leucogenys ENSNLEG00000006006 I 0.622
ENSPANG00000001060 Papio anubis ENSPANG00000001060 I 0.622
HOXD12 Macaca mulatta ENSMMUG00000023501 I 0.622
HOXD12 Pan troglodytes ENSPTRG00000012665 I 0.622
Hoxd12 Mus musculus ENSMUSG00000001823 I 0.622
ENSP00000385586 Macaca fascicularis ENSP00000385586 I 0.622
Hoxd12_CONSTRUCT PBM CONSTRUCTS Hoxd12_CONSTRUCT D 0.622
HOXD12 Microcebus murinus ENSMICG00000002172 I 0.622
ENSTBEG00000010799 Tupaia belangeri ENSTBEG00000010799 I 0.622
ENSSTOG00000004918 Ictidomys tridecemlineatus ENSSTOG00000004918 I 0.622
Hoxd12 Rattus norvegicus ENSRNOG00000001587 I 0.622
ENSPPYG00000012957 Pongo abelii ENSPPYG00000012957 I 0.622
HOXD12 Homo sapiens ENSG00000170178 D 0.622
ENSGGOG00000001340 Gorilla gorilla ENSGGOG00000001340 I 0.622
ENSGGOG00000023318 Gorilla gorilla ENSGGOG00000023318 I 0.622
Alligator_sinensis_CCG010656.1 Alligator sinensis Alligator_sinensis_CCG010656.1 I 0.618
Brh_R002805 Buceros rhinoceros Brh_R002805 I 0.618
ENSAPLG00000008820 Anas platyrhynchos ENSAPLG00000008820 I 0.618
ENSBTAP00000005652-D1 Bos grunniens ENSBTAP00000005652-D1 I 0.618
Afo_R006929 Aptenodytes forsteri Afo_R006929 I 0.618
Aan_R004562 Calypte anna Aan_R004562 I 0.618
HOXD12 Tursiops truncatus ENSTTRG00000013772 I 0.618
HOXD12 Vicugna pacos ENSVPAG00000010196 I 0.618
ENSAMEG00000001858 Ailuropoda melanoleuca ENSAMEG00000001858 I 0.618
Hoxd12 Dipodomys ordii ENSDORG00000009434 I 0.618
Gfo_R001378 Geospiza fortis Gfo_R001378 I 0.618
ENSCSAG00000014464 Chlorocebus sabaeus ENSCSAG00000014464 I 0.618
HOXD12 Cavia porcellus ENSCPOG00000005496 I 0.618
HOXD12 Canis familiaris ENSCAFG00000013429 I 0.618
HOXD12 Dasypus novemcinctus ENSDNOG00000047700 I 0.618
Tal_R000506 Tyto alba Tal_R000506 I 0.618
ENSTSYG00000003740 Tarsius syrichta ENSTSYG00000003740 I 0.618
Myotis_brandtii_HOXD12_10034996 Myotis brandtii Myotis_brandtii_HOXD12_10034996 I 0.618
Ogr14607 Ophisaurus gracilis Ogr14607 I 0.618
HOXD12 Bos taurus ENSBTAG00000004314 I 0.618
ENSTGUG00000008938 Taeniopygia guttata ENSTGUG00000008938 I 0.618
HOXD12 Loxodonta africana ENSLAFG00000017497 I 0.618
HOXD12 Ornithorhynchus anatinus ENSOANG00000004743 I 0.618
ENSOARG00000000088 Ovis aries ENSOARG00000000088 I 0.618
ENSLOCG00000007146 Lepisosteus oculatus ENSLOCG00000007146 I 0.618
ENSMPUG00000014025 Mustela putorius furo ENSMPUG00000014025 I 0.618
HOXD12 Myotis lucifugus ENSMLUG00000007009 I 0.618
ENSMEUG00000009000 Macropus eugenii ENSMEUG00000009000 I 0.618
HOXD12 Monodelphis domestica ENSMODG00000009555 I 0.618
HOXD12 Meleagris gallopavo ENSMGAG00000009673 I 0.618
ENSLACG00000009639 Latimeria chalumnae ENSLACG00000009639 I 0.618
ENSFALG00000003122 Ficedula albicollis ENSFALG00000003122 I 0.618
HOXD12 Gallus gallus ENSGALG00000009274 I 0.618
ENSSHAG00000015948 Sarcophilus harrisii ENSSHAG00000015948 I 0.618
HOXD12 Ochotona princeps ENSOPRG00000011418 I 0.618
HOXD12 Pteropus vampyrus ENSPVAG00000017416 I 0.618
HOXD12 Procavia capensis ENSPCAG00000015624 I 0.618
HOXD12 Sus scrofa ENSSSCG00000015980 I 0.618
ENSACAG00000017914 Anolis carolinensis ENSACAG00000017914 I 0.618
ENSPSIG00000003112 Pelodiscus sinensis ENSPSIG00000003112 I 0.618
SROB_0000632901 Schistosoma rodhaini SROB_0000632901 I 0.603
SCUD_0001296601 Schistosoma curassoni SCUD_0001296601 I 0.599
SMRZ_0000248701 Schistosoma margrebowiei SMRZ_0000248701 I 0.599