Smp_149230 (Schistosoma mansoni)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Smp_149230 T223497_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Irx4
M00416_2.00
Mus musculus
NNNDAMAH

DTKTHNNN
PBM
Berger et al.(2008)
Irx4_2242
0.679 0.912
CBG08197
M02064_2.00
Caenorhabditis briggsae
NNDACDNN

NNHGTHNN
PBM
Weirauch et al.(2014)
pTH6408
0.678 0.702
ara
M06518_2.00
Drosophila melanogaster
WWACA

TGTWW
B1H
Mathelier et al.(2014)
MA0210.1
0.658 0.895
ara
M06313_2.00
Drosophila melanogaster
TGTWWWNN

NNWWWACA
B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904
0.658 0.895
ara
M06314_2.00
Drosophila melanogaster
DWWACA

TGTWWH
B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904
0.658 0.895
Irx6
M00456_2.00
Mus musculus
NNDAHWN

NWDTHNN
PBM
Berger et al.(2008)
Irx6_2623
0.658 0.877
caup
M06519_2.00
Drosophila melanogaster
WAACA

TGTTW
B1H
Mathelier et al.(2014)
MA0217.1
0.650 0.860
caup
M06315_2.00
Drosophila melanogaster
HWDWAACA

TGTTWHWD
B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919
0.650 0.860
caup
M06316_2.00
Drosophila melanogaster
NDDACA

TGTHHN
B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919
0.650 0.860
Irx2
M00386_2.00
Mus musculus
NNDACAHNN

NNDTGTHNN
PBM
Berger et al.(2008)
Irx2_0900
0.638 0.842
Irx5
M00455_2.00
Mus musculus
NNNDACAHN

NDTGTHNNN
PBM
Berger et al.(2008)
Irx5_2385
0.638 0.842
IRX2
M03212_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX2_1
0.638 0.842
IRX5
M03222_2.00
Homo sapiens
NDACAYRACAHN

NDTGTYRTGTHN
SELEX
Jolma et al.(2013)
IRX5_1
0.638 0.842
IRX5
M05315_2.00
Homo sapiens
NBDTGTHNDACAYVN

NBRTGTHNDACAHVN
SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX
0.638 0.842
IRX5
M05316_2.00
Homo sapiens
WYRYGHHNHAYRYRY

RYRYRTDNDDCRYRW
SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX
0.638 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Smp_149230.1:pep Homeodomain 324 383

Links

Other Homeodomain family TFs
Other Schistosoma mansoni TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29736.m002013 Ricinus communis 29736.m002013 I 0.000
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.000
MYB124 Arabidopsis thaliana AT1G14350 D 0.000
MYB88 Arabidopsis thaliana AT2G02820 D 0.000
BGIOSGA026188 Oryza indica BGIOSGA026188 I 0.000
Bo2g136560 Brassica oleracea Bo2g136560 I 0.000
Bo5g019500 Brassica oleracea Bo5g019500 I 0.000
Bo7g080730 Brassica oleracea Bo7g080730 I 0.000
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.000
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.000
Bra019658 Brassica rapa Bra019658 I 0.000
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I 0.000
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.000
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.000
Carubv10017119m.g Capsella rubella Carubv10017119m.g I 0.000
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.000
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.000
Ca_18779 Cicer arietinum Ca_18779 I 0.000
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.000
Cla010333 Citrullus lanatus Cla010333 I 0.000
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.000
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.000
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.000
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.000
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.000
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.000
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.000
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.000
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.000
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.000
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.000
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.000
GRMZM2G064630 Zea mays GRMZM2G064630 I 0.000
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.000
LPERR07G19800 Leersia perrieri LPERR07G19800 I 0.000
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.000
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.000
MDP0000165523 Malus domestica MDP0000165523 I 0.000
MDP0000210970 Malus domestica MDP0000210970 I 0.000
mgf009409m Mimulus guttatus mgf009409m I 0.000
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.000
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.000
OB07G28520 Oryza brachyantha OB07G28520 I 0.000
OBART07G22930 Oryza barthii OBART07G22930 I 0.000
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I 0.000
OPUNC07G21540 Oryza punctata OPUNC07G21540 I 0.000
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.000
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I 0.000
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I 0.000
OS07G0627300 Oryza sativa OS07G0627300 I 0.000
Pavir.J36475 Panicum virgatum Pavir.J36475 I 0.000
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I 0.000
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I 0.000
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.000
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I 0.000
PK05123.1 Cannabis sativa PK05123.1 I 0.000
Pm006532 Prunus mume Pm006532 I 0.000
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.000
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.000
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.000
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.000
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.000
Sb02g040050 Sorghum bicolor Sb02g040050 I 0.000
Si029124m.g Setaria italica Si029124m.g I 0.000
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I 0.000
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.000
TCM_011776 Theobroma cacao TCM_011776 I 0.000
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.000
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.000
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.000