HMRA2 (Saccharomyces cerevisiae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 YCR096C T224757_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMRA2
M00055_2.00		 Saccharomyces cerevisiae
CRTGTAAW
WTTACAYG		 PBM
Badis et al.(2008)
HMRA2_2071		 (Direct) (Direct)
HMRA2
M07484_2.00		 Saccharomyces cerevisiae
YRTGTAAW
WTTACAYR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0318.1		 (Direct) (Direct)
HMRA2
M08571_2.00		 Saccharomyces cerevisiae
YRTGTAAW
WTTACAYR		 Misc
DeBoer et al.(2011)
YCR096C_558		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMLALPHA2
M00915_2.00 		Saccharomyces cerevisiae
NNDACRHN
NDYGTHNN		 PBM
Gordan et al.(2011)
Hmlalpha2 		0.867 1.000
MATALPHA2
M01550_2.00 		Saccharomyces cerevisiae
NDNACAAT
ATTGTNHN		 PBM
Zhu et al.(2009)
Matalpha2 		0.867 1.000
MATALPHA2
M08570_2.00 		Saccharomyces cerevisiae
ACAYGH
DCRTGT		 Misc
DeBoer et al.(2011)
YCR039C_1364 		0.867 1.000
MATALPHA2
M10791_2.00 		Saccharomyces cerevisiae
DWNNACAYGN
NCRTGTNNWH		 Transfac
Matys et al.(2006)
F$MATALPHA2_01 		0.867 1.000
MATALPHA2
M10792_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MATALPHA2_08 		0.867 1.000
MATALPHA2
M10793_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MATALPHA2P_Q4 		0.867 1.000
MATALPHA2
M10794_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MATALPHA2_Q4 		0.867 1.000
MATALPHA2
M02189_2.00 		Saccharomyces cerevisiae
NNNDCDNN
NNHGHNNN		 PBM
Weirauch et al.(2014)
pTH6506 		0.834 0.982
MTAL2_KLUDE
M02197_2.00 		Kluyveromyces delphensis
CRTGTAWW
WWTACAYG		 PBM
Weirauch et al.(2014)
pTH5974 		0.736 0.679
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00055_2.00 Homeodomain 39 97

DNA Binding Domains

Protein ID Domain From To Sequence
YCR096C Homeodomain 40 98

Links

Other Homeodomain family TFs
Other Saccharomyces cerevisiae TFs

Invalid Input OrderBy

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action