Cmyd_10004252 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10004252 T225662_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VSX1
M03087_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX1_1
0.744 0.395
VSX1
M03088_2.00
Homo sapiens
NNYAATTRRBN

NVYYAATTRNN
SELEX
Jolma et al.(2013)
VSX1_2
0.744 0.395
VSX1
M04941_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX
0.744 0.395
VSX1
M04944_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX
0.744 0.395
VSX1
M05869_2.00
Homo sapiens
DGCTAATTAN

NTAATTAGCH
SMiLE-seq
Isakova et al.(2017)
VSX1
0.744 0.395
VSX1
M04942_2.00
Homo sapiens
NTAAYGMN

NKCRTTAN
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1
0.744 0.395
VSX1
M04943_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2
0.744 0.395
VSX1
M04945_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1
0.744 0.395
VSX1
M04946_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2
0.744 0.395
VAX1
M03168_2.00
Homo sapiens
YTAATKAN

NTMATTAR
SELEX
Jolma et al.(2013)
VAX1_1
0.737 0.442
VAX1
M05182_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX
0.737 0.442
VAX1
M05183_2.00
Homo sapiens
BTMATKRN

NYMATKAV
SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX
0.737 0.442
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10004252 Homeodomain 75 117

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

1270 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF398 Homo sapiens ENSG00000197024 D 0.000
ZNF398 Canis familiaris ENSCAFG00000004429 I 0.000
ZNF398 Ochotona princeps ENSOPRG00000010531 I 0.000
ENSPANG00000015944 Papio anubis ENSPANG00000015944 I 0.000
ENSPPYG00000018150 Pongo abelii ENSPPYG00000018150 I 0.000
ZNF398 Pan troglodytes ENSPTRG00000023917 I 0.000
Zfp398 Rattus norvegicus ENSRNOG00000006703 I 0.000
ENSSTOG00000013384 Ictidomys tridecemlineatus ENSSTOG00000013384 I 0.000
ENSTSYG00000002784 Tarsius syrichta ENSTSYG00000002784 I 0.000
ENSP00000338984 Macaca fascicularis ENSP00000338984 I 0.000
ZNF398 Otolemur garnettii ENSOGAG00000016740 I 0.000
ZNF398 Oryctolagus cuniculus ENSOCUG00000008416 I 0.000
ENSNLEG00000003700 Nomascus leucogenys ENSNLEG00000003700 I 0.000
ZNF398 Callithrix jacchus ENSCJAG00000010213 I 0.000
ENSCSAG00000007015 Chlorocebus sabaeus ENSCSAG00000007015 I 0.000
ZNF398 Dasypus novemcinctus ENSDNOG00000038814 I 0.000
ZNF398 Gorilla gorilla ENSGGOG00000005812 I 0.000
ENSMICG00000016618 Microcebus murinus ENSMICG00000016618 I 0.000
ZNF398 Myotis lucifugus ENSMLUG00000007451 I 0.000
ENSMPUG00000006622 Mustela putorius furo ENSMPUG00000006622 I 0.000
Zfp398 Mus musculus ENSMUSG00000062519 I 0.000
Myotis_brandtii_ZNF398_10025637 Myotis brandtii Myotis_brandtii_ZNF398_10025637 I 0.000