gw.260.83.1 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gw.260.83.1 T227645_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
hox12
M02075_2.00 		Ciona intestinalis
TTWAYKAY
RTMRTWAA		 PBM
Weirauch et al.(2014)
pTH6299 		0.683 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.260.83.1 Homeodomain 3 59

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw.260.84.1 Branchiostoma floridae gw.260.84.1 I 0.867
SMU15029209 Schmidtea mediterranea SMU15029209 I 0.732
Sakowv30025348m.g Saccoglossus kowalevskii Sakowv30025348m.g I 0.705
csin103306 Clonorchis sinensis csin103306 I 0.703
T265_10106 Opisthorchis viverrini T265_10106 I 0.703
SNAPOd2T00025381001 Oikopleura dioica SNAPOd2T00025381001 I 0.702
ENSPMAG00000010089 Petromyzon marinus ENSPMAG00000010089 I 0.702
SNAPOd2T00003836001 Oikopleura dioica SNAPOd2T00003836001 I 0.697
SPU_000388 Strongylocentrotus purpuratus SPU_000388 I 0.694
ENSCSAVG00000008685 Ciona savignyi ENSCSAVG00000008685 I 0.685
hox12 Ciona intestinalis ENSCING00000007040 D 0.683
Sakowv30000860m.g Saccoglossus kowalevskii Sakowv30000860m.g I 0.680
SPU_002631 Strongylocentrotus purpuratus SPU_002631 I 0.680
e_gw.260.37.1 Branchiostoma floridae e_gw.260.37.1 I 0.656
e_gw.260.36.1 Branchiostoma floridae e_gw.260.36.1 I 0.656
Ocbimv22015181m.g Octopus bimaculoides Ocbimv22015181m.g N 0.648
CGI_10027385 Crassostrea gigas CGI_10027385 N 0.647
LotgiG100031 Lottia gigantea LotgiG100031 N 0.647
ENSNLEG00000017680 Nomascus leucogenys ENSNLEG00000017680 I 0.644
GPLIN_000726000 Globodera pallida GPLIN_000726000 I 0.610
hox10 Ciona intestinalis ENSCING00000001031 I 0.609
ENSCSAVG00000003530 Ciona savignyi ENSCSAVG00000003530 I 0.609
PTRK_0000303300 Parastrongyloides trichosuri PTRK_0000303300 I 0.607
RSKR_0000904600 Rhabditophanes kr3021 RSKR_0000904600 I 0.606
VSX2 Sus scrofa ENSSSCG00000002363 I 0.604
Ogr12572 Ophisaurus gracilis Ogr12572 I 0.604
TRE_0000208301 Trichobilharzia regenti TRE_0000208301 I 0.601
ENSFALG00000014896 Ficedula albicollis ENSFALG00000014896 I 0.599