CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0635s0026
(
Capsella grandiflora
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Cagra.0635s0026
T228189_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0635s0026.1.p
Homeodomain
24
80
KRPRDLLNPKAVKYLQAVFAVKDAISKRESREISALFGITVAQVREFFVTQKTRVRR
Links
Other
Homeodomain
family TFs
Other
Capsella grandiflora
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10003204m.g
Capsella rubella
Carubv10003204m.g
N
0.867
LD
Arabidopsis thaliana
AT4G02560
N
0.840
LD
Arabidopsis lyrata
scaffold_604015.1
N
0.840
Bostr.2983s0206
Boechera stricta
Bostr.2983s0206
N
0.827
Thhalv10028403m.g
Eutrema salsugineum
Thhalv10028403m.g
N
0.822