Carubv10017952m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10017952m.g T228324_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.834 0.982
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.834 0.982
ATHB-7
M02043_2.00
Arabidopsis thaliana
NHWTGATTGN

NCAATCAWDN
PBM
Weirauch et al.(2014)
pTH8090
0.633 0.860
ATHB-7
M06911_2.00
Arabidopsis thaliana
NHYCAATCATTSW

WSAATGATTGRDN
Dap-seq
OMalley et al.(2016)
ATHB7_col_a
0.633 0.860
Q39944_HELAN
M10802_2.00
Helianthus annuus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HAHB4_01
0.630 0.579
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.618 0.614
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.618 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017952m Homeodomain 29 85

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GF11333 Drosophila ananassae FBgn0088373 N 0.000
GG20467 Drosophila erecta FBgn0112657 N 0.000
Blos1 Drosophila melanogaster FBgn0050077 N 0.000
GM21557 Drosophila sechellia FBgn0176437 N 0.000
GD11063 Drosophila simulans FBgn0182823 N 0.000
GE13598 Drosophila yakuba FBgn0231260 N 0.000