Gorai.002G067100 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.002G067100 T228671_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.722 0.667
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.722 0.667
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.722 0.632
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.722 0.632
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.626 0.491
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.626 0.491
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.626 0.491
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.623 0.474
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.600 0.561
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.600 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G067100.1 Homeodomain 12 68

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL003505 Aedes aegypti AAEL003505 I 0.000
AALB004953 Anopheles albimanus AALB004953 I 0.000
Aan_R000629 Calypte anna Aan_R000629 I 0.000
Aan_R007833 Calypte anna Aan_R007833 I 0.000
AARA000896 Anopheles arabiensis AARA000896 I 0.000
AATE000001 Anopheles atroparvus AATE000001 I 0.000
ACEP18115 Atta cephalotes ACEP18115 I 0.000
ACHR007824 Anopheles christyi ACHR007824 I 0.000
ACOM039814 Anopheles coluzzii ACOM039814 I 0.000
ACUA010101 Anopheles culicifacies ACUA010101 I 0.000
ACYPI001650 Acyrthosiphon pisum ACYPI001650 I 0.000
ACYPI002386 Acyrthosiphon pisum ACYPI002386 I 0.000
ACYPI003844 Acyrthosiphon pisum ACYPI003844 I 0.000
ADAC001590 Anopheles darlingi ADAC001590 I 0.000
ADIR007430 Anopheles dirus ADIR007430 I 0.000
AEPI005437 Anopheles epiroticus AEPI005437 I 0.000
AFAF013592 Anopheles farauti AFAF013592 I 0.000
Afo_R001077 Aptenodytes forsteri Afo_R001077 I 0.000
AFUN001443 Anopheles funestus AFUN001443 I 0.000
AGAP006386 Anopheles gambiae AGAP006386 I 0.000
Alligator_sinensis_CCG017921.1 Alligator sinensis Alligator_sinensis_CCG017921.1 I 0.000
Alligator_sinensis_CCG021387.1 Alligator sinensis Alligator_sinensis_CCG021387.1 I 0.000
AMEC022482 Anopheles melas AMEC022482 I 0.000
AMEM012721 Anopheles merus AMEM012721 I 0.000
AMIN007981 Anopheles minimus AMIN007981 I 0.000
AQUA000947 Anopheles quadriannulatus AQUA000947 I 0.000
ASIS015799 Anopheles sinensis ASIS015799 I 0.000
ASTEI09441 Anopheles stephensi ASTEI09441 I 0.000
BGIBMGA004164 Bombyx mori BGIBMGA004164 I 0.000
BGLB006871 Biomphalaria glabrata BGLB006871 I 0.000
Brh_R003731 Buceros rhinoceros Brh_R003731 I 0.000
CAA44469 Xenopus laevis CAA44469 I 0.000
CapteG178526 Capitella teleta CapteG178526 I 0.000
Cflo_10322--XP_001122040.1_APIME Camponotus floridanus Cflo_10322--XP_001122040.1_APIME I 0.000
CLEC004675 Cimex lectularius CLEC004675 I 0.000
Cmyd_10005897 Chelonia mydas Cmyd_10005897 I 0.000
Cmyd_10020309 Chelonia mydas Cmyd_10020309 I 0.000
CPIJ000084 Culex quinquefasciatus CPIJ000084 I 0.000
CpipJ_CPIJ000084 Culex pipiens CpipJ_CPIJ000084 I 0.000
DAPPUDRAFT_306002 Daphnia pulex DAPPUDRAFT_306002 I 0.000
JUN Anolis carolinensis ENSACAG00000007057 I 0.000
ENSACAG00000023362 Anolis carolinensis ENSACAG00000023362 I 0.000
ENSACAG00000028573 Anolis carolinensis ENSACAG00000028573 I 0.000
ENSAMEG00000000275 Ailuropoda melanoleuca ENSAMEG00000000275 I 0.000
ENSAMEG00000011160 Ailuropoda melanoleuca ENSAMEG00000011160 I 0.000
ENSAMXG00000025030 Astyanax mexicanus ENSAMXG00000025030 I 0.000
ENSAMXG00000025987 Astyanax mexicanus ENSAMXG00000025987 I 0.000
ENSAMXG00000026297 Astyanax mexicanus ENSAMXG00000026297 I 0.000
ENSAPLG00000005928 Anas platyrhynchos ENSAPLG00000005928 I 0.000
JUN Bos taurus ENSBTAG00000004037 I 0.000
JUNB Bos taurus ENSBTAG00000012046 I 0.000
ENSBTAP00000002302-D2 Bos grunniens ENSBTAP00000002302-D2 I 0.000
JUN Canis familiaris ENSCAFG00000018897 I 0.000
JUND Canis familiaris ENSCAFG00000023338 I 0.000
JUNB Canis familiaris ENSCAFG00000028848 I 0.000
jun Ciona intestinalis ENSCING00000009285 I 0.000
JUNB Cavia porcellus ENSCPOG00000020703 I 0.000
JUND Cavia porcellus ENSCPOG00000025912 I 0.000
JUN Cavia porcellus ENSCPOG00000026377 I 0.000
ENSCSAG00000000149 Chlorocebus sabaeus ENSCSAG00000000149 I 0.000
ENSCSAG00000018498 Chlorocebus sabaeus ENSCSAG00000018498 I 0.000
ENSCSAG00000018838 Chlorocebus sabaeus ENSCSAG00000018838 I 0.000
ENSCSAVG00000001734 Ciona savignyi ENSCSAVG00000001734 I 0.000
jun Danio rerio ENSDARG00000043531 I 0.000
junba Danio rerio ENSDARG00000074378 I 0.000
junbb Danio rerio ENSDARG00000104773 I 0.000
JUN Dasypus novemcinctus ENSDNOG00000046358 I 0.000
JUNB Equus caballus ENSECAG00000003816 I 0.000
ENSECAG00000024055 Equus caballus ENSECAG00000024055 I 0.000
JUN Echinops telfairi ENSETEG00000010613 I 0.000
ENSFALG00000015113 Ficedula albicollis ENSFALG00000015113 I 0.000
JUNB Felis catus ENSFCAG00000022803 I 0.000
JUN Felis catus ENSFCAG00000024972 I 0.000
JUND Homo sapiens ENSG00000130522 D 0.000
JUNB Homo sapiens ENSG00000171223 D 0.000
JUN Homo sapiens ENSG00000177606 D 0.000
junbb Gasterosteus aculeatus ENSGACG00000006654 I 0.000
jun Gasterosteus aculeatus ENSGACG00000014608 I 0.000
JUN Gasterosteus aculeatus ENSGACG00000016273 I 0.000
junba Gasterosteus aculeatus ENSGACG00000019095 I 0.000
JUN Gallus gallus ENSGALG00000010870 I 0.000
JUN Gorilla gorilla ENSGGOG00000003233 I 0.000
ENSGGOG00000028553 Gorilla gorilla ENSGGOG00000028553 I 0.000
ENSGMOG00000019642 Gadus morhua ENSGMOG00000019642 I 0.000
ENSGMOG00000020384 Gadus morhua ENSGMOG00000020384 I 0.000
ENSLACG00000001525 Latimeria chalumnae ENSLACG00000001525 I 0.000
ENSLACG00000004975 Latimeria chalumnae ENSLACG00000004975 I 0.000
ENSLACG00000006733 Latimeria chalumnae ENSLACG00000006733 I 0.000
ENSLACG00000015563 Latimeria chalumnae ENSLACG00000015563 I 0.000
JUNB Loxodonta africana ENSLAFG00000008530 I 0.000
JUN Loxodonta africana ENSLAFG00000012900 I 0.000
ENSLOCG00000017745 Lepisosteus oculatus ENSLOCG00000017745 I 0.000
ENSLOCG00000017968 Lepisosteus oculatus ENSLOCG00000017968 I 0.000
ENSLOCG00000018297 Lepisosteus oculatus ENSLOCG00000018297 I 0.000
JUN Meleagris gallopavo ENSMGAG00000011531 I 0.000
ENSMLUG00000012714 Myotis lucifugus ENSMLUG00000012714 I 0.000
ENSMLUG00000022840 Myotis lucifugus ENSMLUG00000022840 I 0.000
JUNB Macaca mulatta ENSMMUG00000005688 I 0.000
ENSMMUG00000032072 Macaca mulatta ENSMMUG00000032072 I 0.000
JUN Monodelphis domestica ENSMODG00000003321 I 0.000
JUND Monodelphis domestica ENSMODG00000003442 I 0.000
ENSMPUG00000018708 Mustela putorius furo ENSMPUG00000018708 I 0.000
ENSMPUG00000019664 Mustela putorius furo ENSMPUG00000019664 I 0.000
ENSMPUG00000020182 Mustela putorius furo ENSMPUG00000020182 I 0.000
Jun Mus musculus ENSMUSG00000052684 D 0.000
Junb Mus musculus ENSMUSG00000052837 D 0.000
Jund Mus musculus ENSMUSG00000071076 D 0.000
ENSNLEG00000014776 Nomascus leucogenys ENSNLEG00000014776 I 0.000
ENSOANG00000007596 Ornithorhynchus anatinus ENSOANG00000007596 I 0.000
ENSOANG00000011383 Ornithorhynchus anatinus ENSOANG00000011383 I 0.000
ENSOARG00000009999 Ovis aries ENSOARG00000009999 I 0.000
ENSOARG00000010854 Ovis aries ENSOARG00000010854 I 0.000
JUN Oryctolagus cuniculus ENSOCUG00000001212 I 0.000
JUN Otolemur garnettii ENSOGAG00000005602 I 0.000
JUND Otolemur garnettii ENSOGAG00000025346 I 0.000
JUNB Otolemur garnettii ENSOGAG00000025664 I 0.000
ENSONIG00000020823 Oreochromis niloticus ENSONIG00000020823 I 0.000
ENSONIG00000021047 Oreochromis niloticus ENSONIG00000021047 I 0.000
ENSONIG00000021072 Oreochromis niloticus ENSONIG00000021072 I 0.000
ENSONIG00000021169 Oreochromis niloticus ENSONIG00000021169 I 0.000
ENSONIG00000021256 Oreochromis niloticus ENSONIG00000021256 I 0.000
JUND Oryzias latipes ENSORLG00000008379 I 0.000
JUN Oryzias latipes ENSORLG00000010096 I 0.000
junba Oryzias latipes ENSORLG00000014533 I 0.000
jun Oryzias latipes ENSORLG00000014541 I 0.000
ENSP00000360266 Macaca fascicularis ENSP00000360266 I 0.000
ENSP00000360266-D1 Bos grunniens ENSP00000360266-D1 I 0.000
ENSPANG00000012317 Papio anubis ENSPANG00000012317 I 0.000
ENSPANG00000018727 Papio anubis ENSPANG00000018727 I 0.000
ENSPFOG00000008616 Poecilia formosa ENSPFOG00000008616 I 0.000
ENSPFOG00000020076 Poecilia formosa ENSPFOG00000020076 I 0.000
ENSPFOG00000020688 Poecilia formosa ENSPFOG00000020688 I 0.000
ENSPFOG00000020898 Poecilia formosa ENSPFOG00000020898 I 0.000
ENSPFOG00000020956 Poecilia formosa ENSPFOG00000020956 I 0.000
ENSPMAG00000003736 Petromyzon marinus ENSPMAG00000003736 I 0.000
ENSPPYG00000001295 Pongo abelii ENSPPYG00000001295 I 0.000
ENSPSIG00000000515 Pelodiscus sinensis ENSPSIG00000000515 I 0.000
ENSPSIG00000000714 Pelodiscus sinensis ENSPSIG00000000714 I 0.000
JUNB Pan troglodytes ENSPTRG00000029110 I 0.000
JUN Pan troglodytes ENSPTRG00000039670 I 0.000
JUN Pteropus vampyrus ENSPVAG00000012803 I 0.000
Jund Rattus norvegicus ENSRNOG00000019568 I 0.000
Jun Rattus norvegicus ENSRNOG00000026293 I 0.000
Junb Rattus norvegicus ENSRNOG00000042838 I 0.000
JUNB Sus scrofa ENSSSCG00000013735 I 0.000
ENSSSCG00000030839 Sus scrofa ENSSSCG00000030839 I 0.000
ENSSTOG00000028549 Ictidomys tridecemlineatus ENSSTOG00000028549 I 0.000
ENSTBEG00000015475 Tupaia belangeri ENSTBEG00000015475 I 0.000
ENSTGUG00000000238 Taeniopygia guttata ENSTGUG00000000238 I 0.000
JUN Taeniopygia guttata ENSTGUG00000009693 I 0.000
JUND Tetraodon nigroviridis ENSTNIG00000010192 I 0.000
junba Tetraodon nigroviridis ENSTNIG00000012055 I 0.000
junba Takifugu rubripes ENSTRUG00000003754 I 0.000
JUND Takifugu rubripes ENSTRUG00000005979 I 0.000
junba Takifugu rubripes ENSTRUG00000007102 I 0.000
JUNB Tursiops truncatus ENSTTRG00000003590 I 0.000
JUND Tursiops truncatus ENSTTRG00000006503 I 0.000
JUN Tursiops truncatus ENSTTRG00000011529 I 0.000
ENSXMAG00000019532 Xiphophorus maculatus ENSXMAG00000019532 I 0.000
ENSXMAG00000019582 Xiphophorus maculatus ENSXMAG00000019582 I 0.000
ENSXMAG00000019940 Xiphophorus maculatus ENSXMAG00000019940 I 0.000
ENSXMAG00000019972 Xiphophorus maculatus ENSXMAG00000019972 I 0.000
ENSXMAG00000020084 Xiphophorus maculatus ENSXMAG00000020084 I 0.000
estExt_fgenesh2_pg.C_1140009 Branchiostoma floridae estExt_fgenesh2_pg.C_1140009 I 0.000
estExt_fgenesh2_pg.C_1140010 Branchiostoma floridae estExt_fgenesh2_pg.C_1140010 I 0.000
estExt_fgenesh2_pg.C_4350042 Branchiostoma floridae estExt_fgenesh2_pg.C_4350042 I 0.000
Jra Drosophila melanogaster FBgn0001291 D 0.000
GF12018 Drosophila ananassae FBgn0089057 I 0.000
GG24138 Drosophila erecta FBgn0116271 I 0.000
GH21247 Drosophila grimshawi FBgn0128709 I 0.000
GI20534 Drosophila mojavensis FBgn0143270 I 0.000
GL17608 Drosophila persimilis FBgn0155211 I 0.000
GM21184 Drosophila sechellia FBgn0176065 I 0.000
GD15385 Drosophila simulans FBgn0187053 I 0.000
GJ22384 Drosophila virilis FBgn0209497 I 0.000
GK21594 Drosophila willistoni FBgn0223586 I 0.000
GE19337 Drosophila yakuba FBgn0236685 I 0.000
GA30492 Drosophila pseudoobscura FBgn0265029 I 0.000
GB53318 Apis mellifera GB53318 I 0.000
Gfo_R010199 Geospiza fortis Gfo_R010199 I 0.000
HelroG115827 Helobdella robusta HelroG115827 I 0.000
HelroG170243 Helobdella robusta HelroG170243 I 0.000
HHAL010436-PA Halyomorpha halys HHAL010436-PA I 0.000
HMEL011777 Heliconius melpomene HMEL011777 I 0.000
Hsal_13335--XP_001122040.1_APIME Harpegnathos saltator Hsal_13335--XP_001122040.1_APIME I 0.000
ISCW000545 Ixodes scapularis ISCW000545 I 0.000
KGM_06357 Danaus plexippus KGM_06357 I 0.000
L798_03990 Zootermopsis nevadensis L798_03990 I 0.000
LDEC004906 Leptinotarsa decemlineata LDEC004906 I 0.000
LLOJ004302 Lutzomyia longipalpis LLOJ004302 I 0.000
LotgiG79422 Lottia gigantea LotgiG79422 I 0.000
MDOA000479 Musca domestica MDOA000479 I 0.000
MESCA001662 Megaselia scalaris MESCA001662 I 0.000
Myotis_brandtii_Junb_10009210 Myotis brandtii Myotis_brandtii_Junb_10009210 I 0.000
Myotis_brandtii_Jun_10020944 Myotis brandtii Myotis_brandtii_Jun_10020944 I 0.000
NV16554 Nasonia vitripennis NV16554 I 0.000
Ocbimv22005044m.g Octopus bimaculoides Ocbimv22005044m.g I 0.000
Ogr01111 Ophisaurus gracilis Ogr01111 I 0.000
Ogr06319 Ophisaurus gracilis Ogr06319 I 0.000
Ogr14876 Ophisaurus gracilis Ogr14876 I 0.000
PHUM379500 Pediculus humanus PHUM379500 I 0.000
Pvit_08017 Pogona vitticeps Pvit_08017 I 0.000
Pvit_09607 Pogona vitticeps Pvit_09607 I 0.000
Pvit_09971 Pogona vitticeps Pvit_09971 I 0.000
RPRC014918 Rhodnius prolixus RPRC014918 I 0.000
Sakowv30020463m.g Saccoglossus kowalevskii Sakowv30020463m.g I 0.000
SINV15314 Solenopsis invicta SINV15314 I 0.000
SMAR004380 Strigamia maritima SMAR004380 I 0.000
SPAL_0001132900 Strongyloides papillosus SPAL_0001132900 I 0.000
SPU_003102 Strongylocentrotus purpuratus SPU_003102 I 0.000
SSTP_0000472400 Strongyloides stercoralis SSTP_0000472400 I 0.000
SVE_0118900 Strongyloides venezuelensis SVE_0118900 I 0.000
Tal_R003549 Tyto alba Tal_R003549 I 0.000
TC006814 Tribolium castaneum TC006814 I 0.000
junb.S Xenopus laevis XB-GENE-17340269 I 0.000
jun.S Xenopus laevis XB-GENE-17344878 I 0.000
junb.L Xenopus laevis XB-GENE-6077948 I 0.000
jun.L Xenopus laevis XB-GENE-864843 I 0.000
junb Xenopus tropicalis XB-GENE-945864 I 0.000
jund Xenopus tropicalis XB-GENE-955776 D 0.000
jund.S Xenopus laevis XB-GENE-955780 I 0.000
XP_002931634 Xenopus tropicalis XP_002931634 I 0.000
XP_002940649 Xenopus tropicalis XP_002940649 I 0.000
YQE_10175 Dendroctonus ponderosae YQE_10175 I 0.000