Gorai.002G067100 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.002G067100 T228671_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20392.1
M01250_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11331
0.722 0.667
PK20392.1
M01251_2.00
Cannabis sativa
NHAATMATDN

NHATKATTDN
PBM
Lambert et al.(2019)
pTH11332
0.722 0.667
ATHB-20
M06912_2.00
Arabidopsis thaliana
HYAATAATTRD

HYAATTATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_col_a
0.722 0.632
ATHB-20
M06913_2.00
Arabidopsis thaliana
HYAATMATTRD

HYAATKATTRD
Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a
0.722 0.632
ATHB-51
M00867_2.00
Arabidopsis thaliana
ATWATKNN

NNMATWAT
PBM
Franco-Zorrilla et al.(2014)
ATHB51
0.626 0.491
ATHB-51
M06927_2.00
Arabidopsis thaliana
DNCAATAATTGAD

HTCAATTATTGNH
Dap-seq
OMalley et al.(2016)
LMI1_col_a
0.626 0.491
ATHB-51
M06928_2.00
Arabidopsis thaliana
NDNCAATAATTGA

TCAATTATTGNHN
Dap-seq
OMalley et al.(2016)
LMI1_colamp_a
0.626 0.491
ATHB-22
M02041_2.00
Arabidopsis thaliana
NNATAATWWWNNN

NNNWWWATTATNN
PBM
Weirauch et al.(2014)
pTH5883
0.623 0.474
ATHB-12
M00865_2.00
Arabidopsis thaliana
NNNNNNNN

NNNNNNNN
PBM
Franco-Zorrilla et al.(2014)
ATHB12
0.600 0.561
ATHB-12
M02045_2.00
Arabidopsis thaliana
BHWWWWWWDV

BHWWWWWWDV
PBM
Weirauch et al.(2014)
pTH7207
0.600 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G067100.1 Homeodomain 12 68

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000019557 Ailuropoda melanoleuca ENSAMEG00000019557 I 0.000
Alligator_sinensis_CCG004420.1 Alligator sinensis Alligator_sinensis_CCG004420.1 I 0.000
ENSAPLG00000001073 Anas platyrhynchos ENSAPLG00000001073 I 0.000
ZBTB1 Anolis carolinensis ENSACAG00000015782 I 0.000
Afo_R011034 Aptenodytes forsteri Afo_R011034 I 0.000
ENSP00000378201-D1 Bos grunniens ENSP00000378201-D1 I 0.000
ZBTB1 Bos taurus ENSBTAG00000040551 I 0.000
Brh_R003425 Buceros rhinoceros Brh_R003425 I 0.000
ZBTB1 Callithrix jacchus ENSCJAG00000019591 I 0.000
Aan_R001674 Calypte anna Aan_R001674 I 0.000
ZBTB1 Canis familiaris ENSCAFG00000016030 I 0.000
ZBTB1 Cavia porcellus ENSCPOG00000011379 I 0.000
Cmyd_10012311 Chelonia mydas Cmyd_10012311 I 0.000
ZBTB1 Dasypus novemcinctus ENSDNOG00000015051 I 0.000
ZBTB1 Felis catus ENSFCAG00000031472 I 0.000
Gfo_R006806 Geospiza fortis Gfo_R006806 I 0.000
ZBTB1 Gorilla gorilla ENSGGOG00000016483 I 0.000
ZBTB1 Homo sapiens ENSG00000126804 I 0.000
ENSSTOG00000028335 Ictidomys tridecemlineatus ENSSTOG00000028335 I 0.000
ENSLACG00000016384 Latimeria chalumnae ENSLACG00000016384 I 0.000
ZBTB1 Loxodonta africana ENSLAFG00000018528 I 0.000
ENSP00000378201 Macaca fascicularis ENSP00000378201 I 0.000
ZBTB1 Meleagris gallopavo ENSMGAG00000015392 I 0.000
ZBTB1 Monodelphis domestica ENSMODG00000023946 I 0.000
Zbtb1 Mus musculus ENSMUSG00000033454 D 0.000
ZBTB1 Myotis lucifugus ENSMLUG00000016560 I 0.000
ENSNLEG00000014246 Nomascus leucogenys ENSNLEG00000014246 I 0.000
ZBTB1 Ochotona princeps ENSOPRG00000010400 I 0.000
Ogr05927 Ophisaurus gracilis Ogr05927 I 0.000
ZBTB1 Oryctolagus cuniculus ENSOCUG00000011740 I 0.000
ZBTB1 Otolemur garnettii ENSOGAG00000016795 I 0.000
ENSOARG00000001006 Ovis aries ENSOARG00000001006 I 0.000
ZBTB1 Pan troglodytes ENSPTRG00000006438 I 0.000
Pvit_18915 Pogona vitticeps Pvit_18915 I 0.000
ZBTB1 Pteropus vampyrus ENSPVAG00000017582 I 0.000
ENSSHAG00000010188 Sarcophilus harrisii ENSSHAG00000010188 I 0.000
ZBTB1 Taeniopygia guttata ENSTGUG00000012931 I 0.000
ZBTB1 Tursiops truncatus ENSTTRG00000000531 I 0.000
Tal_R000310 Tyto alba Tal_R000310 I 0.000
ZBTB1 Vicugna pacos ENSVPAG00000004877 I 0.000