CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J39623
(
Panicum virgatum
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
Pavir.J39623
T229376_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KNOX3_HORVU
M10790_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$KNOX3_01
0.626
0.614
KNAT6
M02037_2.00
Arabidopsis thaliana
NNWGACNNNN
NNNNGTCWNN
PBM
Weirauch et al.(2014)
pTH7296
0.606
0.614
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J39623.1.p
Homeodomain
21
81
RKRRAGKLPGDTTSILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH
Links
Other
Homeodomain
family TFs
Other
Panicum virgatum
TFs
283 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy