CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf00145-augustus-gene-0.13
(
Meloidogyne floridensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
maker-nMf.1.1.scaf00145-augustus-gene-0.13
T235017_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Uncx
M00443_2.00
Mus musculus
NTAATNDN
NHNATTAN
PBM
Berger et al.(2008)
Uncx4
0.613
0.784
uncx
M02111_2.00
Tetraodon nigroviridis
NNTAATTRN
NYAATTANN
PBM
Weirauch et al.(2014)
pTH5474
0.613
0.784
UNCX
M03191_2.00
Homo sapiens
NWAATTVVRTHWN
NWDAYBBAATTWN
SELEX
Jolma et al.(2013)
UNCX_1
0.613
0.784
UNCX
M03192_2.00
Homo sapiens
NTAATTRN
NYAATTAN
SELEX
Jolma et al.(2013)
UNCX_2
0.613
0.784
Uncx
M03264_2.00
Mus musculus
NTAATTVRATTAN
NTAATYBAATTAN
SELEX
Jolma et al.(2013)
Uncx_1
0.613
0.784
Uncx
M03265_2.00
Mus musculus
NTAATTRR
YYAATTAN
SELEX
Jolma et al.(2013)
Uncx_2
0.613
0.784
UNCX
M05240_2.00
Homo sapiens
NYAATTRV
BYAATTRN
SELEX
Yin et al.(2017)
UNCX_eDBD_HT-SELEX
0.613
0.784
UNCX
M05241_2.00
Homo sapiens
NYRRYKNN
NNMRYYRN
SELEX
Yin et al.(2017)
UNCX_eDBD_Methyl-HT-SELEX
0.613
0.784
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf00145-augustus-gene-0.13-mRNA-1
Homeodomain
231
281
RRTRTNFSNWQLNELENAFESGHYPDVFMREALALRLDLLESRVQVKNQNN
Links
Other
Homeodomain
family TFs
Other
Meloidogyne floridensis
TFs
207 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy