CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OBART03G28460
(
Oryza barthii
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00447 (HSF_DNA-bind)
IPR000232
OBART03G28460
T241375_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.337
0.578
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.337
0.578
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.327
0.533
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.327
0.533
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OBART03G28460.1
HSF
3
55
SSNAGVFSGDDIISWNDDGSTFVVWRPAEFARDLLPQVGVRQRRFRRGVRRLL
Links
Other
HSF
family TFs
Other
Oryza barthii
TFs
129 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OMERI03G25120
Oryza meridionalis
OMERI03G25120
I
0.345
OGLUM08G23900
Oryza glumaepatula
OGLUM08G23900
I
0.343
Sb02g030490
Sorghum bicolor
Sb02g030490
I
0.343
OMERI08G17470
Oryza meridionalis
OMERI08G17470
I
0.343
OPUNC08G20670
Oryza punctata
OPUNC08G20670
I
0.343
ONIVA08G25630
Oryza nivara
ONIVA08G25630
I
0.343
LPERR08G19290
Leersia perrieri
LPERR08G19290
I
0.343
HSFB2B
Oryza sativa
OS08G0546800
I
0.343
ORGLA08G0219000
Oryza glaberrima
ORGLA08G0219000
I
0.343
ORUFI08G25100
Oryza rufipogon
ORUFI08G25100
I
0.343
OB08G29340
Oryza brachyantha
OB08G29340
I
0.343
BGIOSGA026537
Oryza indica
BGIOSGA026537
I
0.343
OMERI09G12670
Oryza meridionalis
OMERI09G12670
I
0.342
GRMZM2G165272
Zea mays
GRMZM2G165272
I
0.342
OGLUM09G17660
Oryza glumaepatula
OGLUM09G17660
I
0.342
OBART08G22550
Oryza barthii
OBART08G22550
I
0.342
ORUFI09G18440
Oryza rufipogon
ORUFI09G18440
I
0.342
LPERR09G13100
Leersia perrieri
LPERR09G13100
I
0.342
ONIVA09G18150
Oryza nivara
ONIVA09G18150
I
0.342
BGIOSGA029403
Oryza indica
BGIOSGA029403
I
0.342
HSFB2C
Oryza sativa
OS09G0526600
I
0.342
Si030094m.g
Setaria italica
Si030094m.g
I
0.342
Pavir.J03297
Panicum virgatum
Pavir.J03297
I
0.342
OPUNC09G15460
Oryza punctata
OPUNC09G15460
I
0.342
BRADI4G35780
Brachypodium distachyon
BRADI4G35780
I
0.342
BGIOSGA011509
Oryza indica
BGIOSGA011509
I
0.342
TCM_016198
Theobroma cacao
TCM_016198
I
0.340
SapurV1A.0507s0120
Salix purpurea
SapurV1A.0507s0120
I
0.340
Lus10024508.g
Linum usitatissimum
Lus10024508.g
I
0.340
30190.m011156
Ricinus communis
30190.m011156
I
0.340
GRMZM2G098696
Zea mays
GRMZM2G098696
I
0.340
Gorai.003G160600
Gossypium raimondii
Gorai.003G160600
I
0.340
AMTR_s00069p00068180
Amborella trichopoda
AMTR_s00069p00068180
I
0.340
POPTR_0001s08990
Populus trichocarpa
POPTR_0001s08990
I
0.340
Bra040968
Brassica rapa
Bra040968
I
0.340
Lus10008007.g
Linum usitatissimum
Lus10008007.g
I
0.340
GSMUA_Achr4G19760_001
Musa acuminata
GSMUA_Achr4G19760_001
I
0.339
GRMZM2G164909
Zea mays
GRMZM2G164909
I
0.339
Carubv10001204m.g
Capsella rubella
Carubv10001204m.g
I
0.339
evm.TU.supercontig_74.64
Carica papaya
evm.TU.supercontig_74.64
I
0.339
Thhalv10028744m.g
Eutrema salsugineum
Thhalv10028744m.g
I
0.339
Cucsa.206000
Cucumis sativus
Cucsa.206000
I
0.339
Cagra.1912s0005
Capsella grandiflora
Cagra.1912s0005
I
0.339
cassava7014.valid.m1
Manihot esculenta
cassava7014.valid.m1
I
0.339
Cla011664
Citrullus lanatus
Cla011664
I
0.339
AT-HSFB2B
Vitis vinifera
VIT_02s0025g04170
I
0.339
GSMUA_Achr4G29100_001
Musa acuminata
GSMUA_Achr4G29100_001
I
0.339
PK17549.1
Cannabis sativa
PK17549.1
I
0.338
PGSC0003DMG400012105
Solanum tuberosum
PGSC0003DMG400012105
I
0.338
Bo3g045370
Brassica oleracea
Bo3g045370
I
0.338
PGSC0003DMG400003053
Solanum tuberosum
PGSC0003DMG400003053
I
0.338
HSFB2B
Arabidopsis thaliana
AT4G11660
D
0.337
AT-HSFB2B
Arabidopsis lyrata
scaffold_603575.1
I
0.337
Eucgr.E00555
Eucalyptus grandis
Eucgr.E00555
I
0.337
mgf014237m
Mimulus guttatus
mgf014237m
I
0.337
Bostr.25463s0156
Boechera stricta
Bostr.25463s0156
I
0.337
Solyc08g080540.2
Solanum lycopersicum
Solyc08g080540.2
I
0.336
Gorai.008G244400
Gossypium raimondii
Gorai.008G244400
I
0.336
PGSC0003DMG400014323
Solanum tuberosum
PGSC0003DMG400014323
I
0.335
GLYMA11G02800
Glycine max
GLYMA11G02800
I
0.335
chr2.CM0304.780.nc
Lotus japonicus
chr2.CM0304.780.nc
I
0.334
Ciclev10021287m.g
Citrus clementina
Ciclev10021287m.g
I
0.334
GLYMA01G42640
Glycine max
GLYMA01G42640
I
0.334
Ca_02416
Cicer arietinum
Ca_02416
I
0.334
gene02464-v1.0-hybrid
Fragaria vesca
gene02464-v1.0-hybrid
I
0.334
PRUPE_ppa014675mg
Prunus persica
PRUPE_ppa014675mg
I
0.333
Pm029600
Prunus mume
Pm029600
I
0.333
Pavir.Ga00998
Panicum virgatum
Pavir.Ga00998
I
0.332
GRMZM2G301485
Zea mays
GRMZM2G301485
I
0.332
Pavir.Fb02392
Panicum virgatum
Pavir.Fb02392
I
0.332
HSFB2A
Oryza sativa
OS04G0568700
I
0.332
OB04G29050
Oryza brachyantha
OB04G29050
I
0.332
LPERR04G18020
Leersia perrieri
LPERR04G18020
I
0.332
BGIOSGA016941
Oryza indica
BGIOSGA016941
I
0.332
Ca_07234
Cicer arietinum
Ca_07234
I
0.332
OBART04G22030
Oryza barthii
OBART04G22030
I
0.332
ONIVA04G20610
Oryza nivara
ONIVA04G20610
I
0.332
OMERI04G18580
Oryza meridionalis
OMERI04G18580
I
0.332
OPUNC04G19790
Oryza punctata
OPUNC04G19790
I
0.332
ORGLA04G0190900
Oryza glaberrima
ORGLA04G0190900
I
0.332
ORUFI04G23680
Oryza rufipogon
ORUFI04G23680
I
0.332
LjSGA_040741.1
Lotus japonicus
LjSGA_040741.1
I
0.332
OLONG_012454
Oryza longistaminata
OLONG_012454
I
0.332
Sb06g025710
Sorghum bicolor
Sb06g025710
I
0.332
OGLUM04G22060
Oryza glumaepatula
OGLUM04G22060
I
0.332
MTR_7g091370
Medicago truncatula
MTR_7g091370
I
0.331
GSMUA_Achr1G16240_001
Musa acuminata
GSMUA_Achr1G16240_001
I
0.331
AT-HSFB3
Vitis vinifera
VIT_08s0007g08750
I
0.330
POPTR_0016s05680
Populus trichocarpa
POPTR_0016s05680
I
0.330
mgf002110m
Mimulus guttatus
mgf002110m
I
0.330
cassava43059.valid.m1
Manihot esculenta
cassava43059.valid.m1
I
0.329
AMTR_s00132p00118400
Amborella trichopoda
AMTR_s00132p00118400
I
0.329
PK19243.1
Cannabis sativa
PK19243.1
I
0.329
Eucgr.A02338
Eucalyptus grandis
Eucgr.A02338
I
0.329
Ciclev10005649m.g
Citrus clementina
Ciclev10005649m.g
I
0.329
orange1.1g025781m.g
Citrus sinensis
orange1.1g025781m.g
I
0.329
SapurV1A.0228s0170
Salix purpurea
SapurV1A.0228s0170
I
0.328
30006.m000287
Ricinus communis
30006.m000287
I
0.328
TCM_024565
Theobroma cacao
TCM_024565
I
0.328
Solyc03g026020.2
Solanum lycopersicum
Solyc03g026020.2
I
0.328
Carubv10023839m.g
Capsella rubella
Carubv10023839m.g
I
0.327
Cagra.0914s0008
Capsella grandiflora
Cagra.0914s0008
I
0.327
Pavir.Ba01265
Panicum virgatum
Pavir.Ba01265
I
0.327
HSFB3
Arabidopsis thaliana
AT2G41690
D
0.327
Sb07g025120
Sorghum bicolor
Sb07g025120
I
0.327
Thhalv10017795m.g
Eutrema salsugineum
Thhalv10017795m.g
I
0.326
mgf004940m
Mimulus guttatus
mgf004940m
I
0.326
Bra000235
Brassica rapa
Bra000235
I
0.325
GSMUA_Achr1G07880_001
Musa acuminata
GSMUA_Achr1G07880_001
I
0.325
MLOC_75166
Hordeum vulgare
MLOC_75166
I
0.325
Traes_5BL_FCB1625F3
Triticum aestivum
Traes_5BL_FCB1625F3
I
0.324
POPTR_0006s04770
Populus trichocarpa
POPTR_0006s04770
I
0.324
GSMUA_Achr1G03910_001
Musa acuminata
GSMUA_Achr1G03910_001
I
0.324
gene32416-v1.0-hybrid
Fragaria vesca
gene32416-v1.0-hybrid
I
0.324
MTR_5g010680
Medicago truncatula
MTR_5g010680
I
0.323
TRIUR3_31165
Triticum urartu
TRIUR3_31165
I
0.323
F775_19430
Aegilops tauschii
F775_19430
I
0.323
Pm023788
Prunus mume
Pm023788
I
0.322
PRUPE_ppa008441mg
Prunus persica
PRUPE_ppa008441mg
I
0.322
AT-HSFB3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4001910
I
0.322
MDP0000127499
Malus domestica
MDP0000127499
I
0.322
GLYMA10G07620
Glycine max
GLYMA10G07620
I
0.322
Bostr.11568s0011
Boechera stricta
Bostr.11568s0011
I
0.322
PGSC0003DMG400027283
Solanum tuberosum
PGSC0003DMG400027283
I
0.321
Bo3g108110
Brassica oleracea
Bo3g108110
I
0.320
Bra010049
Brassica rapa
Bra010049
I
0.320
BRADI3G42130
Brachypodium distachyon
BRADI3G42130
I
0.320
GLYMA03G29190
Glycine max
GLYMA03G29190
I
0.319
Solyc04g016000.2
Solanum lycopersicum
Solyc04g016000.2
I
0.319