CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla003499
(
Citrullus lanatus
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Cla003499
T246326_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.838
0.838
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.737
0.737
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla003499
LOB
13
111
PCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQKLQKELDAAKA
Links
Other
LOB
family TFs
Other
Citrullus lanatus
TFs
241 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy