Carubv10025067m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10025067m.g T246785_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10025067m LOB 7 106

Links

Other LOB family TFs
Other Capsella rubella TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.24513s0089 Boechera stricta Bostr.24513s0089 N 0.990
LBD14 Arabidopsis thaliana AT2G31310 N 0.990
Cagra.6952s0010 Capsella grandiflora Cagra.6952s0010 N 0.990
LBD14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001244 N 0.980
Bra021737 Brassica rapa Bra021737 N 0.970
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.939
Bo4g052270 Brassica oleracea Bo4g052270 N 0.929
Bra018260 Brassica rapa Bra018260 N 0.798
Ca_12214 Cicer arietinum Ca_12214 I 0.758
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.758
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.747
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.747
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.747
Ca_07763 Cicer arietinum Ca_07763 I 0.737
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.737
mgf020773m Mimulus guttatus mgf020773m I 0.737
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.737
OB08G30680 Oryza brachyantha OB08G30680 I 0.737
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.737
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.737
Bra014581 Brassica rapa Bra014581 I 0.737
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.737
LBD29 Arabidopsis thaliana AT3G58190 I 0.737
Bo8g092560 Brassica oleracea Bo8g092560 I 0.737
PK23380.1 Cannabis sativa PK23380.1 I 0.731
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.727
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.727
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.727
Cla006087 Citrullus lanatus Cla006087 I 0.727
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.727
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.727
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.727
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.727
28428.m000040 Ricinus communis 28428.m000040 I 0.727
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.727
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.727
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.727
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.727
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.727
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.727
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.727
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.727
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.717
OS08G0563400 Oryza sativa OS08G0563400 I 0.717
OBART08G23860 Oryza barthii OBART08G23860 I 0.717
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.717
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.717
Bra016876 Brassica rapa Bra016876 N 0.717
Bo4g191540 Brassica oleracea Bo4g191540 N 0.717
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.717
Bo4g108600 Brassica oleracea Bo4g108600 I 0.717
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.717
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.717
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.717
Cla015094 Citrullus lanatus Cla015094 I 0.717
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.717
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.717
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.717
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.717
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.707
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.707
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.707
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.707
Si015156m.g Setaria italica Si015156m.g I 0.707
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.707
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.707
Bra007385 Brassica rapa Bra007385 N 0.707
Pm020627 Prunus mume Pm020627 I 0.707
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.707
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.707
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.707
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.707
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.707