CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK23380.1
(
Cannabis sativa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
PK23380.1
T247393_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.791
0.791
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.791
0.791
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.791
0.791
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.761
0.761
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.761
0.761
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.746
0.746
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.746
0.746
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK23380.1
LOB
8
75
PCGACKFLRRKCINGCIFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQA
Links
Other
LOB
family TFs
Other
Cannabis sativa
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mgf020773m
Mimulus guttatus
mgf020773m
I
0.955
GLYMA13G18210
Glycine max
GLYMA13G18210
I
0.940
GLYMA10G04050
Glycine max
GLYMA10G04050
I
0.925
Pm020628
Prunus mume
Pm020628
I
0.925
Lus10033873.g
Linum usitatissimum
Lus10033873.g
I
0.925
Eucgr.B01529
Eucalyptus grandis
Eucgr.B01529
I
0.925
Aquca_017_00693
Aquilegia coerulea
Aquca_017_00693
I
0.910
Cucsa.053450
Cucumis sativus
Cucsa.053450
I
0.910
GLYMA19G34600
Glycine max
GLYMA19G34600
I
0.910
BRADI1G75110
Brachypodium distachyon
BRADI1G75110
I
0.881
MLOC_10784
Hordeum vulgare
MLOC_10784
I
0.881
Traes_4BL_A4D0F4AD6
Triticum aestivum
Traes_4BL_A4D0F4AD6
I
0.881
Cucsa.388160
Cucumis sativus
Cucsa.388160
I
0.881
Traes_4DL_43D63ABE3
Triticum aestivum
Traes_4DL_43D63ABE3
I
0.881
OB08G30680
Oryza brachyantha
OB08G30680
I
0.881
GSMUA_Achr8G14330_001
Musa acuminata
GSMUA_Achr8G14330_001
I
0.866
Si015156m.g
Setaria italica
Si015156m.g
I
0.866
F775_22967
Aegilops tauschii
F775_22967
I
0.851
Bo8g092560
Brassica oleracea
Bo8g092560
I
0.851
Aquca_034_00400
Aquilegia coerulea
Aquca_034_00400
I
0.851
LPERR08G20530
Leersia perrieri
LPERR08G20530
I
0.851
Traes_4DS_11C3B0459
Triticum aestivum
Traes_4DS_11C3B0459
I
0.851
GSMUA_AchrUn_randomG07730_001
Musa acuminata
GSMUA_AchrUn_randomG07730_001
I
0.836
Pavir.J03376
Panicum virgatum
Pavir.J03376
I
0.836
GSMUA_Achr4G25190_001
Musa acuminata
GSMUA_Achr4G25190_001
I
0.836
Bra016876
Brassica rapa
Bra016876
N
0.821
Bostr.25993s0537
Boechera stricta
Bostr.25993s0537
I
0.806
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.806
Bra007385
Brassica rapa
Bra007385
N
0.806
Lus10033872.g
Linum usitatissimum
Lus10033872.g
I
0.806
cassava25975.m1
Manihot esculenta
cassava25975.m1
I
0.791
BGIOSGA005344
Oryza indica
BGIOSGA005344
I
0.791
LBD16
Vitis vinifera
VIT_07s0005g03030
I
0.791
Solyc09g066260.2
Solanum lycopersicum
Solyc09g066260.2
I
0.791
ORUFI02G39110
Oryza rufipogon
ORUFI02G39110
I
0.791
OS02G0820500
Oryza sativa
OS02G0820500
I
0.791
POPTR_0002s04210
Populus trichocarpa
POPTR_0002s04210
I
0.791
POPTR_0014s06590
Populus trichocarpa
POPTR_0014s06590
I
0.791
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.791
MDP0000254224
Malus domestica
MDP0000254224
I
0.791
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.791
chr1.LjT38H23.30.nd
Lotus japonicus
chr1.LjT38H23.30.nd
I
0.791
LjT35F15.70.nd
Lotus japonicus
LjT35F15.70.nd
I
0.791
LBD16
Arabidopsis thaliana
AT2G42430
D
0.791
Lus10014757.g
Linum usitatissimum
Lus10014757.g
I
0.791
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
0.791
ORGLA02G0327800
Oryza glaberrima
ORGLA02G0327800
I
0.791
evm.TU.supercontig_18.118
Carica papaya
evm.TU.supercontig_18.118
I
0.791
Gorai.001G251600
Gossypium raimondii
Gorai.001G251600
I
0.791
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
0.791
Traes_6AS_4EEA3E388
Triticum aestivum
Traes_6AS_4EEA3E388
I
0.791
Bra016877
Brassica rapa
Bra016877
I
0.791
OGLUM02G38740
Oryza glumaepatula
OGLUM02G38740
I
0.791
ONIVA02G40360
Oryza nivara
ONIVA02G40360
I
0.791
OMERI02G35350
Oryza meridionalis
OMERI02G35350
I
0.791
Cagra.2098s0013
Capsella grandiflora
Cagra.2098s0013
I
0.776
LBD20
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000301
I
0.776
Bra001087
Brassica rapa
Bra001087
I
0.776
Pm028642
Prunus mume
Pm028642
I
0.776
Bostr.19046s0098
Boechera stricta
Bostr.19046s0098
I
0.776
Carubv10015417m.g
Capsella rubella
Carubv10015417m.g
I
0.776
PDK_20s1428661g002
Phoenix dactylifera
PDK_20s1428661g002
I
0.776
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.776
Gorai.007G144400
Gossypium raimondii
Gorai.007G144400
I
0.776
gene24461-v1.0-hybrid
Fragaria vesca
gene24461-v1.0-hybrid
I
0.776
LBD20
Arabidopsis thaliana
AT3G03760
I
0.776
Aquca_017_00683
Aquilegia coerulea
Aquca_017_00683
I
0.776
PRUPE_ppa024802mg
Prunus persica
PRUPE_ppa024802mg
I
0.776
POPTR_0002s14990
Populus trichocarpa
POPTR_0002s14990
I
0.776
Si019578m.g
Setaria italica
Si019578m.g
I
0.776
PGSC0003DMG400022454
Solanum tuberosum
PGSC0003DMG400022454
I
0.776
Solyc01g098220.1
Solanum lycopersicum
Solyc01g098220.1
I
0.776
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.761
evm.TU.supercontig_1.438
Carica papaya
evm.TU.supercontig_1.438
I
0.761
Solyc06g083930.1
Solanum lycopersicum
Solyc06g083930.1
I
0.761
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.761
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.761
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.761
OS03G0246900
Oryza sativa
OS03G0246900
I
0.761
LPERR02G31040
Leersia perrieri
LPERR02G31040
I
0.761
chr5.CM0494.160.nd
Lotus japonicus
chr5.CM0494.160.nd
I
0.761
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.761
GSMUA_Achr1G01350_001
Musa acuminata
GSMUA_Achr1G01350_001
I
0.761
GSMUA_Achr3G27340_001
Musa acuminata
GSMUA_Achr3G27340_001
I
0.761
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.761
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.761
OB03G20590
Oryza brachyantha
OB03G20590
I
0.761
F775_21330
Aegilops tauschii
F775_21330
N
0.761
Traes_6DL_850266B2A
Triticum aestivum
Traes_6DL_850266B2A
I
0.761
OBART03G10450
Oryza barthii
OBART03G10450
I
0.761
gw1.61.81.1
Physcomitrella patens
gw1.61.81.1
I
0.761
TRIUR3_01477
Triticum urartu
TRIUR3_01477
I
0.761
Traes_6AL_D6045E37C
Triticum aestivum
Traes_6AL_D6045E37C
I
0.761
gw1.261.12.1
Physcomitrella patens
gw1.261.12.1
I
0.761
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.761
OB10G12360
Oryza brachyantha
OB10G12360
I
0.761
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.746
GLYMA02G27230
Glycine max
GLYMA02G27230
I
0.746
Thhalv10028937m.g
Eutrema salsugineum
Thhalv10028937m.g
I
0.746
GSMUA_Achr5G13230_001
Musa acuminata
GSMUA_Achr5G13230_001
I
0.746
Cla021625
Citrullus lanatus
Cla021625
I
0.746
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.746
PGSC0003DMG400020069
Solanum tuberosum
PGSC0003DMG400020069
I
0.746
Bostr.14547s0031
Boechera stricta
Bostr.14547s0031
I
0.746
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.746
LBD30
Arabidopsis thaliana
AT4G00220
D
0.746
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.746
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.746
Bra018260
Brassica rapa
Bra018260
N
0.731
Carubv10025067m.g
Capsella rubella
Carubv10025067m.g
N
0.731
MDP0000429067
Malus domestica
MDP0000429067
I
0.731
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.731
Bo4g052270
Brassica oleracea
Bo4g052270
N
0.731
gene19355-v1.0-hybrid
Fragaria vesca
gene19355-v1.0-hybrid
I
0.731
OLONG_028429
Oryza longistaminata
OLONG_028429
I
0.731
BRADI3G22510
Brachypodium distachyon
BRADI3G22510
I
0.731
POPTR_0010s20800
Populus trichocarpa
POPTR_0010s20800
I
0.731
GLYMA18G45320
Glycine max
GLYMA18G45320
I
0.716
SapurV1A.0024s0790
Salix purpurea
SapurV1A.0024s0790
I
0.716
gene26330-v1.0-hybrid
Fragaria vesca
gene26330-v1.0-hybrid
N
0.716
Cucsa.362830
Cucumis sativus
Cucsa.362830
I
0.716
Eucgr.K03284
Eucalyptus grandis
Eucgr.K03284
I
0.716
Gorai.004G219900
Gossypium raimondii
Gorai.004G219900
I
0.716
BRADI3G55680
Brachypodium distachyon
BRADI3G55680
I
0.716
Gorai.011G267700
Gossypium raimondii
Gorai.011G267700
I
0.716
MDP0000123797
Malus domestica
MDP0000123797
N
0.701
LBD14
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_4001244
N
0.701
chr3.LjT44N20.90.nd
Lotus japonicus
chr3.LjT44N20.90.nd
I
0.701
LPERR03G03460
Leersia perrieri
LPERR03G03460
I
0.701
PK00972.1
Cannabis sativa
PK00972.1
I
0.700