PGSC0003DMG400020069 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400020069 T245827_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.808 0.808
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.808 0.808
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400051680 LOB 7 106

Links

Other LOB family TFs
Other Solanum tuberosum TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.970
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.848
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.828
Pm020629 Prunus mume Pm020629 I 0.828
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.828
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.828
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.828
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.828
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.828
29883.m002035 Ricinus communis 29883.m002035 I 0.818
MDP0000145761 Malus domestica MDP0000145761 I 0.818
TCM_004106 Theobroma cacao TCM_004106 I 0.818
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.818
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.818
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.808
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.808
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.808
Bo4g016000 Brassica oleracea Bo4g016000 I 0.808
Bra004693 Brassica rapa Bra004693 I 0.808
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.808
LBD16 Arabidopsis thaliana AT2G42430 D 0.808
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.808
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.808
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.808
Cla006088 Citrullus lanatus Cla006088 I 0.808
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.808
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.808
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.808
Bra016877 Brassica rapa Bra016877 I 0.808
Bo4g191530 Brassica oleracea Bo4g191530 I 0.808
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.798
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.798
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.798
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.798
MDP0000131964 Malus domestica MDP0000131964 I 0.798
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.798
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.798
Ca_12213 Cicer arietinum Ca_12213 I 0.798
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.798
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.788
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.788
Bo3g036030 Brassica oleracea Bo3g036030 I 0.778
Bra000257 Brassica rapa Bra000257 I 0.778
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.769
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.768
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.768
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.768
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.768
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.756
Bo3g036000 Brassica oleracea Bo3g036000 I 0.753
mgf026090m Mimulus guttatus mgf026090m I 0.753
Bra001087 Brassica rapa Bra001087 I 0.750
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.750
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.747
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.747
PK23380.1 Cannabis sativa PK23380.1 I 0.746
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.744
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.737
OB02G44330 Oryza brachyantha OB02G44330 I 0.737
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.737
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.737
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.736
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.733
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.727
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.727
Cagra.0686s0035 Capsella grandiflora Cagra.0686s0035 I 0.727
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.727
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.727
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.727
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.727
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.727
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.727
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.727
Si019578m.g Setaria italica Si019578m.g I 0.727
OS02G0820500 Oryza sativa OS02G0820500 I 0.727
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.727
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.727
Carubv10018619m.g Capsella rubella Carubv10018619m.g I 0.727
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.727
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.727
PK21617.1 Cannabis sativa PK21617.1 I 0.717
MDP0000254224 Malus domestica MDP0000254224 I 0.717
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.717
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.717
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.717
TCM_005496 Theobroma cacao TCM_005496 I 0.717
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.717
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.717
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.717
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.717
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.717
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.713
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.713
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.713
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.711
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
Ca_20429 Cicer arietinum Ca_20429 I 0.708
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.707
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.707
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.707
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.707
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
OS10G0162600 Oryza sativa OS10G0162600 I 0.707
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.707
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.707
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.707
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.707
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.707
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.707
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.707
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.707
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.707
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.707
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.705
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.702
OBART02G37570 Oryza barthii OBART02G37570 I 0.701