Ca_20429 (Cicer arietinum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ca_20429 T246320_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.742 0.742
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.742 0.742
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.742 0.742
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.742 0.742
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.719 0.719
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.719 0.719
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.708 0.708
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.708 0.708
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_20429 LOB 11 102

Links

Other LOB family TFs
Other Cicer arietinum TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.865
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.820
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.809
MDP0000429067 Malus domestica MDP0000429067 I 0.809
PK25573.1 Cannabis sativa PK25573.1 I 0.809
Pm017935 Prunus mume Pm017935 I 0.809
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.798
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.798
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.798
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.798
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.787
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.787
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.787
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.787
OS03G0246900 Oryza sativa OS03G0246900 I 0.787
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.787
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.787
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.787
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.787
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.787
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.787
OBART03G10450 Oryza barthii OBART03G10450 I 0.787
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.787
MDP0000254224 Malus domestica MDP0000254224 I 0.787
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.787
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.780
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.778
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.775
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.775
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.775
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.775
LBD31 Arabidopsis thaliana AT4G00210 I 0.775
OB03G20590 Oryza brachyantha OB03G20590 I 0.775
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.775
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.775
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.775
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.766
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.764
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.764
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.764
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.764
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.764
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.764
OB10G12360 Oryza brachyantha OB10G12360 I 0.764
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.764
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.758
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.758
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.755
Bo9g002150 Brassica oleracea Bo9g002150 I 0.753
Bo4g195510 Brassica oleracea Bo4g195510 I 0.753
chr1.CM1255.90.nc Lotus japonicus chr1.CM1255.90.nc N 0.753
Bra040312 Brassica rapa Bra040312 I 0.753
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.753
Bra037322 Brassica rapa Bra037322 I 0.753
TCM_005496 Theobroma cacao TCM_005496 I 0.750
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.747
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.747
LBD19 Arabidopsis thaliana AT2G45410 D 0.742
Bo4g024620 Brassica oleracea Bo4g024620 I 0.742
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.742
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.742
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.742
Bra004910 Brassica rapa Bra004910 I 0.742
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.742
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.737
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.737
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.737
Ca_19598 Cicer arietinum Ca_19598 I 0.737
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.737
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.730
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.730
Cla021625 Citrullus lanatus Cla021625 I 0.730
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.730
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.730
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.727
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.727
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.724
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.719
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.719
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.719
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.719
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.719
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.719
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.719
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.719
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.719
Si015156m.g Setaria italica Si015156m.g I 0.719
Si019578m.g Setaria italica Si019578m.g I 0.719
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.719
LBD30 Arabidopsis thaliana AT4G00220 D 0.719
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.719
Bo4g024610 Brassica oleracea Bo4g024610 I 0.719
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.717
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.717
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.717
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.717
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.717
Cla007069 Citrullus lanatus Cla007069 I 0.717
30174.m008897 Ricinus communis 30174.m008897 I 0.717
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.717
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.716
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.708
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.708
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.708
OB08G30680 Oryza brachyantha OB08G30680 I 0.708
LBD16 Arabidopsis thaliana AT2G42430 D 0.708
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.708
F775_22967 Aegilops tauschii F775_22967 I 0.708
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.708
Bra016877 Brassica rapa Bra016877 I 0.708
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.708
MDP0000145761 Malus domestica MDP0000145761 I 0.708
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.708
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.708
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.708
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.708
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.708
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.708
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.708
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.708
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.708
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.708
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.708
Pm020627 Prunus mume Pm020627 I 0.708
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.708
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.708
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.708
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.708
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.708
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.708
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.708
OS02G0820500 Oryza sativa OS02G0820500 I 0.708
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.708
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.708
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.708
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.708
TCM_005497 Theobroma cacao TCM_005497 I 0.707
Cla007068 Citrullus lanatus Cla007068 I 0.707
Pm017936 Prunus mume Pm017936 I 0.707
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.707
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.707
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.707
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.707
30174.m008898 Ricinus communis 30174.m008898 I 0.707
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.707
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.707
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.707
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.707
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.707
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.707
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.701
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.701