POPTR_0002s14980 (Populus trichocarpa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 POPTR_0002s14980 T245862_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.777 0.777
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.777 0.777
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.734 0.734
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.734 0.734
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.713 0.713
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s14980.1 LOB 12 107

Links

Other LOB family TFs
Other Populus trichocarpa TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.894
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.872
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.872
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.862
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.862
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.862
30174.m008897 Ricinus communis 30174.m008897 I 0.862
MDP0000429067 Malus domestica MDP0000429067 I 0.851
TCM_005497 Theobroma cacao TCM_005497 I 0.851
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.851
Pm017935 Prunus mume Pm017935 I 0.851
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.851
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.840
Ca_19598 Cicer arietinum Ca_19598 I 0.840
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.840
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.840
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.830
PK25573.1 Cannabis sativa PK25573.1 I 0.830
Cla007069 Citrullus lanatus Cla007069 I 0.819
mgf020735m Mimulus guttatus mgf020735m I 0.819
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.818
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.809
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.808
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.798
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.798
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.788
Cla007068 Citrullus lanatus Cla007068 I 0.787
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.787
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.787
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.787
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.787
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.787
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.787
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.787
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.787
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.787
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.787
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.787
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.787
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.787
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.787
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.787
30174.m008898 Ricinus communis 30174.m008898 I 0.787
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.777
OS03G0246900 Oryza sativa OS03G0246900 I 0.777
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.777
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.777
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.777
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.777
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.777
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.777
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.777
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.777
MDP0000254224 Malus domestica MDP0000254224 I 0.777
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.777
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.777
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.777
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.777
OBART03G10450 Oryza barthii OBART03G10450 I 0.777
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.777
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.777
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.777
LBD19 Arabidopsis thaliana AT2G45410 D 0.777
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.777
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.777
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.777
Ca_20429 Cicer arietinum Ca_20429 I 0.766
Ca_20428 Cicer arietinum Ca_20428 I 0.766
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.766
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.766
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.766
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.766
TCM_005496 Theobroma cacao TCM_005496 I 0.766
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.766
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.766
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.766
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.766
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.766
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.766
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.755
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.755
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.755
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.755
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.755
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.755
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.755
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.755
OB03G20590 Oryza brachyantha OB03G20590 I 0.755
OB10G12360 Oryza brachyantha OB10G12360 I 0.755
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.755
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.747
Pm017936 Prunus mume Pm017936 I 0.747
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.747
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.747
Bo2g097560 Brassica oleracea Bo2g097560 I 0.745
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.745
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.745
Bo4g195510 Brassica oleracea Bo4g195510 I 0.745
Bra040312 Brassica rapa Bra040312 I 0.745
Bra008514 Brassica rapa Bra008514 I 0.745
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.745
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.745
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.745
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.745
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.745
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.745
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.745
OS10G0162600 Oryza sativa OS10G0162600 I 0.745
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.745
Bo9g002150 Brassica oleracea Bo9g002150 I 0.734
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.734
Bra037322 Brassica rapa Bra037322 I 0.734
Bra004910 Brassica rapa Bra004910 I 0.734
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.734
LBD18 Arabidopsis thaliana AT2G45420 D 0.734
LBD31 Arabidopsis thaliana AT4G00210 I 0.734
Bra040311 Brassica rapa Bra040311 I 0.734
Bo4g024620 Brassica oleracea Bo4g024620 I 0.734
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.734
Bo4g195520 Brassica oleracea Bo4g195520 I 0.734
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.734
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.734
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.734
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.734
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.734
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.734
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.727
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.723
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.723
Bo4g024610 Brassica oleracea Bo4g024610 I 0.723
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.723
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.723
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.723
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.723
chr1.CM1255.90.nc Lotus japonicus chr1.CM1255.90.nc N 0.723
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.713
Bra037323 Brassica rapa Bra037323 I 0.713
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.713
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.713
LBD30 Arabidopsis thaliana AT4G00220 D 0.713
Cla021625 Citrullus lanatus Cla021625 I 0.713
Bra004908 Brassica rapa Bra004908 I 0.713
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.713
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.713
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.713
Bo9g002160 Brassica oleracea Bo9g002160 I 0.713
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.707
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.702
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.702
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.702
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.702
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.702
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.702
Ca_12213 Cicer arietinum Ca_12213 I 0.702
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.702
TCM_004106 Theobroma cacao TCM_004106 I 0.702
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.702
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.702
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.702
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.702