Eucgr.K01522 (Eucalyptus grandis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Eucgr.K01522 T246863_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.778 0.778
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.778 0.778
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.758 0.758
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.758 0.758
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.727 0.727
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.727 0.727
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.K01522.1 LOB 9 108

Links

Other LOB family TFs
Other Eucalyptus grandis TFs

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm028642 Prunus mume Pm028642 I 0.899
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.899
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.899
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.889
30072.m000955 Ricinus communis 30072.m000955 I 0.879
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.879
Bra036436 Brassica rapa Bra036436 I 0.879
Bo1g153580 Brassica oleracea Bo1g153580 I 0.879
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.879
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.879
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.879
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.879
MDP0000322059 Malus domestica MDP0000322059 I 0.879
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.869
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.869
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.869
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.869
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.869
TCM_025849 Theobroma cacao TCM_025849 I 0.869
mgf006429m Mimulus guttatus mgf006429m I 0.869
LBD20 Arabidopsis thaliana AT3G03760 I 0.869
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.869
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.869
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.859
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.848
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.838
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.838
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.828
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.828
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.828
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.828
Pm017936 Prunus mume Pm017936 I 0.828
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.828
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.828
Cla002965 Citrullus lanatus Cla002965 I 0.828
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.828
30174.m008898 Ricinus communis 30174.m008898 I 0.828
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.818
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.818
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.818
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.818
Cla007068 Citrullus lanatus Cla007068 I 0.818
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.818
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.818
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.818
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.818
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.818
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.818
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.816
TCM_005496 Theobroma cacao TCM_005496 I 0.815
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.808
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.808
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.808
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.808
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.808
OBART03G10450 Oryza barthii OBART03G10450 I 0.798
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.798
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.798
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.798
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.798
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.798
OS03G0246900 Oryza sativa OS03G0246900 I 0.798
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.798
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.798
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.798
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.798
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.798
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.798
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.798
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.798
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.798
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.798
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.798
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.798
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.798
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.798
Ca_19716 Cicer arietinum Ca_19716 I 0.788
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.788
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.788
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.788
Bra040311 Brassica rapa Bra040311 I 0.788
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.788
MTR_6g027710 Medicago truncatula MTR_6g027710 I 0.788
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.778
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.778
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.778
Bra008514 Brassica rapa Bra008514 I 0.778
Bo4g195520 Brassica oleracea Bo4g195520 I 0.778
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.778
Bo2g097560 Brassica oleracea Bo2g097560 I 0.778
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.778
Bo4g024620 Brassica oleracea Bo4g024620 I 0.778
Bra004910 Brassica rapa Bra004910 I 0.778
LBD18 Arabidopsis thaliana AT2G45420 D 0.778
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.778
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.768
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.768
Bo9g002160 Brassica oleracea Bo9g002160 I 0.768
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.768
Bra037323 Brassica rapa Bra037323 I 0.768
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.768
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.768
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.768
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.768
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.758
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.758
Pm017935 Prunus mume Pm017935 I 0.758
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.758
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.758
MDP0000254224 Malus domestica MDP0000254224 I 0.758
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.758
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.758
LBD30 Arabidopsis thaliana AT4G00220 D 0.758
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.758
Ca_12213 Cicer arietinum Ca_12213 I 0.758
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.758
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.758
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.758
OB10G12360 Oryza brachyantha OB10G12360 I 0.758
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.758
MDP0000429067 Malus domestica MDP0000429067 I 0.758
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.758
Pm020629 Prunus mume Pm020629 I 0.747
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.747
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.747
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.747
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.747
TCM_004106 Theobroma cacao TCM_004106 I 0.747
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.747
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.747
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.747
OS10G0162600 Oryza sativa OS10G0162600 I 0.747
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.747
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.747
PK25573.1 Cannabis sativa PK25573.1 I 0.747
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.747
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.747
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.747
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.747
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.747
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.747
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.747
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.747
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.747
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.747
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.737
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.737
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.737
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.737
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.737
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.737
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.737
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.737
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.737
30174.m008897 Ricinus communis 30174.m008897 I 0.737
29883.m002035 Ricinus communis 29883.m002035 I 0.737
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.737
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.737
Cla006088 Citrullus lanatus Cla006088 I 0.737
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.737
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.737
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.737
Bo4g191530 Brassica oleracea Bo4g191530 I 0.737
Bo4g016000 Brassica oleracea Bo4g016000 I 0.737
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.737
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.737
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.737
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.737
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.737
Ca_19598 Cicer arietinum Ca_19598 I 0.737
Bra004693 Brassica rapa Bra004693 I 0.737
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.737
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.737
TCM_005497 Theobroma cacao TCM_005497 I 0.737
Bo3g036000 Brassica oleracea Bo3g036000 I 0.731
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.727
LBD16 Arabidopsis thaliana AT2G42430 D 0.727
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.727
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.727
Bra016877 Brassica rapa Bra016877 I 0.727
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.727
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.727
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.727
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.727
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.727
OS02G0820500 Oryza sativa OS02G0820500 I 0.727
OB02G44330 Oryza brachyantha OB02G44330 I 0.727
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.727
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.727
MDP0000131964 Malus domestica MDP0000131964 I 0.727
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.727
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.727
MDP0000145761 Malus domestica MDP0000145761 I 0.727
Cla007069 Citrullus lanatus Cla007069 I 0.727
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.727
OB03G20590 Oryza brachyantha OB03G20590 I 0.727
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.727
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.727
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.727
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.727
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.727
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.727
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.723
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.718
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.717
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.717
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.717
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.717
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.717
Si019578m.g Setaria italica Si019578m.g I 0.717
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.717
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.717
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.717
Bo3g036030 Brassica oleracea Bo3g036030 I 0.717
Bra000257 Brassica rapa Bra000257 I 0.717
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.717
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.717
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.717
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.717
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.717
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.707
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.707
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.707
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.707
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.707
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.707
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.707
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.707
PK23185.1 Cannabis sativa PK23185.1 I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.707
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.707
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.707
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.707
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.707
28428.m000040 Ricinus communis 28428.m000040 I 0.707
Pm020627 Prunus mume Pm020627 I 0.707
Cla021625 Citrullus lanatus Cla021625 I 0.707
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.707
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.707
mgf020773m Mimulus guttatus mgf020773m I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.707
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
Sb03g035920 Sorghum bicolor Sb03g035920 N 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.707
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.702