MTR_8g036105 (Medicago truncatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MTR_8g036105 T245488_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.808 0.808
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.808 0.808
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.798 0.798
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.798 0.798
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.768 0.768
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH19042 LOB 18 117

Links

Other LOB family TFs
Other Medicago truncatula TFs

273 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.960
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.949
Ca_19598 Cicer arietinum Ca_19598 I 0.949
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.909
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.899
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.889
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.889
30174.m008897 Ricinus communis 30174.m008897 I 0.889
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.879
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.879
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.879
Pm017935 Prunus mume Pm017935 I 0.879
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.879
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.869
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.869
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.869
PK25573.1 Cannabis sativa PK25573.1 I 0.869
Cla007068 Citrullus lanatus Cla007068 I 0.869
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.869
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.869
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.869
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.869
MDP0000429067 Malus domestica MDP0000429067 I 0.869
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.859
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.859
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.859
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.859
Pm017936 Prunus mume Pm017936 I 0.859
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.859
Cla007069 Citrullus lanatus Cla007069 I 0.859
TCM_005497 Theobroma cacao TCM_005497 I 0.859
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.859
OBART03G10450 Oryza barthii OBART03G10450 I 0.859
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.859
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.859
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.859
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.859
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.859
OS03G0246900 Oryza sativa OS03G0246900 I 0.859
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.859
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.859
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.859
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.848
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.848
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.848
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.848
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.848
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.848
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.848
30174.m008898 Ricinus communis 30174.m008898 I 0.848
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.848
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.848
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.840
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.838
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.838
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.838
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.838
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.838
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.838
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.838
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.838
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.838
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.838
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.838
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.828
mgf020735m Mimulus guttatus mgf020735m I 0.828
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.828
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.828
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.828
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.824
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.818
OB10G12360 Oryza brachyantha OB10G12360 I 0.818
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.818
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.818
LBD31 Arabidopsis thaliana AT4G00210 I 0.818
TCM_005496 Theobroma cacao TCM_005496 I 0.815
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.809
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.808
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.808
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.808
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.808
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.808
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.808
Bra040311 Brassica rapa Bra040311 I 0.808
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.808
Bo4g195520 Brassica oleracea Bo4g195520 I 0.808
LBD19 Arabidopsis thaliana AT2G45410 D 0.808
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.798
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.798
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.798
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.798
OS10G0162600 Oryza sativa OS10G0162600 I 0.798
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.798
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.798
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.798
Bo4g024620 Brassica oleracea Bo4g024620 I 0.798
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.798
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.798
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.798
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.798
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.798
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.798
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.798
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.798
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.798
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.798
LBD18 Arabidopsis thaliana AT2G45420 D 0.798
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.798
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.798
Bra008514 Brassica rapa Bra008514 I 0.788
Bra004910 Brassica rapa Bra004910 I 0.788
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.788
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.788
Bo2g097560 Brassica oleracea Bo2g097560 I 0.788
Bra037323 Brassica rapa Bra037323 I 0.778
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.778
Bo9g002160 Brassica oleracea Bo9g002160 I 0.778
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.778
Ca_20428 Cicer arietinum Ca_20428 I 0.778
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.778
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.778
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.768
MDP0000254224 Malus domestica MDP0000254224 I 0.768
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.768
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.768
mgf006429m Mimulus guttatus mgf006429m I 0.768
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.768
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.768
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.768
Bra040312 Brassica rapa Bra040312 I 0.768
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.768
LBD30 Arabidopsis thaliana AT4G00220 D 0.768
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.768
Bra037322 Brassica rapa Bra037322 I 0.768
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.768
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.768
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.768
Bo9g002150 Brassica oleracea Bo9g002150 I 0.768
Bo4g195510 Brassica oleracea Bo4g195510 I 0.764
Bo1g153580 Brassica oleracea Bo1g153580 I 0.758
Cla021625 Citrullus lanatus Cla021625 I 0.758
Bo4g024610 Brassica oleracea Bo4g024610 I 0.758
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.758
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.758
LBD20 Arabidopsis thaliana AT3G03760 I 0.758
OB03G20590 Oryza brachyantha OB03G20590 I 0.758
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.758
Ca_20429 Cicer arietinum Ca_20429 I 0.758
TCM_004106 Theobroma cacao TCM_004106 I 0.758
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.758
Bra036436 Brassica rapa Bra036436 I 0.758
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.758
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.758
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.758
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.758
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.758
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.758
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.747
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.747
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.747
30072.m000955 Ricinus communis 30072.m000955 I 0.747
Pm028642 Prunus mume Pm028642 I 0.747
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.747
PK23185.1 Cannabis sativa PK23185.1 I 0.747
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.747
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.747
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.747
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.747
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.747
Bra004908 Brassica rapa Bra004908 I 0.747
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.747
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.747
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.737
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.737
MDP0000322059 Malus domestica MDP0000322059 I 0.737
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.737
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.737
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.737
MDP0000145761 Malus domestica MDP0000145761 I 0.737
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.737
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.737
Cla002965 Citrullus lanatus Cla002965 I 0.737
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.737
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.737
TCM_025849 Theobroma cacao TCM_025849 I 0.737
Si015156m.g Setaria italica Si015156m.g I 0.737
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.737
Pm020629 Prunus mume Pm020629 I 0.737
Ca_12213 Cicer arietinum Ca_12213 I 0.737
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.737
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.727
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.727
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.727
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.727
OBART08G23860 Oryza barthii OBART08G23860 I 0.727
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.727
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.727
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.727
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.727
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.727
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.727
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.727
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.727
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.727
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.727
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.727
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.727
OB08G30680 Oryza brachyantha OB08G30680 I 0.727
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.727
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.727
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.727
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.727
OS08G0563400 Oryza sativa OS08G0563400 I 0.727
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.727
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.727
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.724
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.724
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.717
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.717
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.717
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.717
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.717
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.717
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.717
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.717
F775_22967 Aegilops tauschii F775_22967 I 0.717
29883.m002035 Ricinus communis 29883.m002035 I 0.717
Cla006088 Citrullus lanatus Cla006088 I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.717
Si019578m.g Setaria italica Si019578m.g I 0.717
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.717
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.707
OS02G0820500 Oryza sativa OS02G0820500 I 0.707
OB02G44330 Oryza brachyantha OB02G44330 I 0.707
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
GSMUA_Achr4G28810_001 Musa acuminata GSMUA_Achr4G28810_001 I 0.707
F775_04528 Aegilops tauschii F775_04528 I 0.707
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.707
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.707
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.707
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.707
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.707
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.707
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.707
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.707
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.707
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.707
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.707
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.707
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.707