LBD31 (Arabidopsis thaliana)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AT4G00210 T244898_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.768 0.768
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.768 0.768
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.717 0.717
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G00210.1 LOB 11 110

Links

Other LOB family TFs
Other Arabidopsis thaliana TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.939
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.929
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.919
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.889
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.838
Bra037322 Brassica rapa Bra037322 I 0.828
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.828
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.828
Bo9g002150 Brassica oleracea Bo9g002150 I 0.828
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.818
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.818
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.818
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.808
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.808
Ca_19598 Cicer arietinum Ca_19598 I 0.808
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.798
PK25573.1 Cannabis sativa PK25573.1 I 0.798
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.798
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.791
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.788
mgf020735m Mimulus guttatus mgf020735m I 0.788
TCM_005497 Theobroma cacao TCM_005497 I 0.788
MDP0000429067 Malus domestica MDP0000429067 I 0.788
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.788
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.788
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.788
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.788
Pm017935 Prunus mume Pm017935 I 0.778
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.778
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.778
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.778
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.778
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.778
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.778
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.778
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.778
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.778
Ca_20429 Cicer arietinum Ca_20429 I 0.775
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.768
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.768
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.768
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.768
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.768
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.768
30174.m008897 Ricinus communis 30174.m008897 I 0.768
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.768
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.768
LBD19 Arabidopsis thaliana AT2G45410 D 0.768
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.768
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.768
30174.m008898 Ricinus communis 30174.m008898 I 0.758
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.758
Cla007069 Citrullus lanatus Cla007069 I 0.758
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.758
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.758
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.758
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.758
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.758
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.758
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.758
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.758
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.758
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.758
OB10G12360 Oryza brachyantha OB10G12360 I 0.758
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.758
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.758
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.758
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.758
OS03G0246900 Oryza sativa OS03G0246900 I 0.758
OS10G0162600 Oryza sativa OS10G0162600 I 0.758
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.758
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.758
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.758
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.758
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.758
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.758
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.758
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.758
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.758
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.758
OBART03G10450 Oryza barthii OBART03G10450 I 0.758
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.758
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.758
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.758
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.753
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.747
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.747
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.747
Cla007068 Citrullus lanatus Cla007068 I 0.747
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.747
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.747
Bra040312 Brassica rapa Bra040312 I 0.747
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.747
Bo4g024610 Brassica oleracea Bo4g024610 I 0.747
Pm017936 Prunus mume Pm017936 I 0.747
Ca_20428 Cicer arietinum Ca_20428 I 0.747
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.744
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.737
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.737
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.737
Bra004908 Brassica rapa Bra004908 I 0.737
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.734
Bo4g195510 Brassica oleracea Bo4g195510 I 0.730
MDP0000254224 Malus domestica MDP0000254224 I 0.728
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.727
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.727
Bo4g195520 Brassica oleracea Bo4g195520 I 0.727
Bra040311 Brassica rapa Bra040311 I 0.727
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.727
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.727
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.727
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.727
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.723
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.717
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.717
Cla002965 Citrullus lanatus Cla002965 I 0.717
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.717
Bo4g024620 Brassica oleracea Bo4g024620 I 0.717
Bra004910 Brassica rapa Bra004910 I 0.717
TCM_005496 Theobroma cacao TCM_005496 I 0.717
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.717
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.717
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.717
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.717
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.717
mgf006429m Mimulus guttatus mgf006429m I 0.717
LBD18 Arabidopsis thaliana AT2G45420 D 0.717
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.711
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.709
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.707
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.707
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.707
MDP0000322059 Malus domestica MDP0000322059 I 0.707
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.707
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.707
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.707
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.707
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.707
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.707
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.707
Pm028642 Prunus mume Pm028642 I 0.707
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.707
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.705
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.701